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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_0989 and Dsui_0990 are separated by 156 nucleotides
Dsui_0990 and Dsui_0991 overlap by 14 nucleotides
Dsui_0991 and Dsui_0992 overlap by 20 nucleotides
Dsui_0992 and Dsui_0993 overlap by 8 nucleotides
Dsui_0989: Dsui_0989 - amidohydrolase, at 1,016,543 to 1,017,706
_0989
Dsui_0990: Dsui_0990 - putative P-loop-containing kinase, at 1,017,863 to 1,018,735
_0990
Dsui_0991: Dsui_0991 - hypothetical protein, at 1,018,722 to 1,019,150
_0991
Dsui_0992: Dsui_0992 - putative membrane protein, at 1,019,131 to 1,019,706
_0992
Dsui_0993: Dsui_0993 - polyprenyl p-hydroxybenzoate/phenylacrylic acid decarboxylase, at 1,019,699 to 1,020,316
_0993
Group
Condition
Dsui
_0989
Dsui
_0990
Dsui
_0991
Dsui
_0992
Dsui
_0993
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.1
-3.0
N.D.
-4.8
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.4
-3.2
N.D.
-4.2
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.3
-3.2
N.D.
-3.9
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
-3.1
N.D.
-3.7
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.5
-3.4
N.D.
-3.7
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.4
-3.2
N.D.
-3.3
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
-3.1
N.D.
-3.1
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.3
-3.1
N.D.
-3.2
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.6
-3.4
N.D.
-2.9
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.1
-2.9
N.D.
-2.3
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.5
-3.3
N.D.
-2.5
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.4
-3.2
N.D.
-2.6
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.4
-2.0
N.D.
-3.2
N.D.
anaerobic
Anaerobic growth in rich media with perchlorate electron acceptor
-0.3
-4.2
N.D.
-0.1
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
+0.1
-2.6
N.D.
-1.9
N.D.
alp rich
rich media
-0.0
-1.1
N.D.
-3.0
N.D.
stress
rich media with sodium chlorite 0.16 mM
-0.1
-2.6
N.D.
-1.2
N.D.
alp rich
rich media
+0.0
-2.4
N.D.
-1.3
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
+0.1
-0.2
N.D.
-3.3
N.D.
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-0.4
-1.9
N.D.
-0.7
N.D.
stress
rich media with hydrogen peroxide 5 mM
-0.0
-1.3
N.D.
-1.6
N.D.
carbon source
R2A with sodium pyruvate
+0.2
-2.2
N.D.
-0.8
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
+0.1
+0.3
N.D.
-3.3
N.D.
anaerobic
Anaero. lactate (C), nitrate electron acceptor
+0.2
-1.1
N.D.
-1.5
N.D.
stress
ALP with Nickel (II) chloride 2.5 mM
+0.3
-2.8
N.D.
+0.1
N.D.
carbon source
defined media with 30 mM sodium lactate
+0.1
+0.5
N.D.
-2.2
N.D.
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.0
+0.7
N.D.
-2.2
N.D.
alp rich
rich media
-0.1
+0.9
N.D.
-1.8
N.D.
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.3
+1.2
N.D.
-1.4
N.D.
stress
ALP with Fusidic 0.01 mg/ml
+0.1
+0.8
N.D.
+2.0
N.D.
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