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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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2
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_0979 and Dsui_0980 are separated by 132 nucleotides
Dsui_0980 and Dsui_0981 are separated by 20 nucleotides
Dsui_0981 and Dsui_0982 are separated by 63 nucleotides
Dsui_0982 and Dsui_0983 are separated by 188 nucleotides
Dsui_0979: Dsui_0979 - TIGR00730 family protein, at 1,005,583 to 1,006,167
_0979
Dsui_0980: Dsui_0980 - acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta), at 1,006,300 to 1,007,907
_0980
Dsui_0981: Dsui_0981 - enoyl-CoA hydratase/carnithine racemase, at 1,007,928 to 1,008,719
_0981
Dsui_0982: Dsui_0982 - acetyl/propionyl-CoA carboxylase, alpha subunit, at 1,008,783 to 1,010,786
_0982
Dsui_0983: Dsui_0983 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,010,975 to 1,013,275
_0983
Group
Condition
Dsui
_0979
Dsui
_0980
Dsui
_0981
Dsui
_0982
Dsui
_0983
stress
ALP with copper (II) chloride 0.6 mM
+0.3
-0.9
-0.5
-0.6
-0.8
stress
ALP with Zinc 2 mM
+0.1
-0.7
-0.4
-0.5
-0.5
carbon source
pyruvate (C)
+0.2
-0.1
-1.1
-0.7
-0.2
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.5
-0.4
-0.9
+0.1
-0.1
stress
ALP with sodium fluoride 40 mM
+0.1
-0.1
-0.8
-0.7
-0.2
carbon source
propionate (C)
-0.0
-0.1
-0.3
-1.3
-0.0
stress
ALP with Cobalt chloride 0.2 mM
+0.2
-0.5
-0.2
-0.9
-0.2
stress
rich media with sodium chlorite 0.16 mM
-0.4
-0.3
-0.7
-0.5
+0.3
stress
ALP with Nickel (II) chloride 1.5 mM
+0.1
-0.2
-0.1
-0.8
-0.6
stress
ALP with Nickel (II) chloride 2.5 mM
+0.3
-0.2
-0.1
-1.6
+0.0
stress
ALP with Dimethyl Sulfoxide 2 vol%
+0.3
-0.4
-0.2
-0.5
-0.6
alp rich
rich media
-0.5
-0.1
-1.0
-0.1
+0.2
carbon source
pyruvate (C)
+0.3
-0.3
-0.1
-1.2
+0.1
stress
ALP with nitrite 0.15 mM
+0.3
-0.2
-0.9
-0.6
+0.1
carbon source
D-Lactate (C)
+0.4
-0.2
-0.1
-0.9
-0.4
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.4
-0.2
-0.8
-0.2
+0.2
stress
ALP with perchlorate 6 mM
+0.4
-0.0
+0.2
-0.7
-0.3
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.4
-0.4
-1.0
-0.2
+0.5
carbon source
propionate (C)
+0.4
-0.1
+0.3
-0.4
-0.4
carbon source
D,L-Lactate (C)
+0.1
-0.1
+0.8
-0.7
-0.2
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.3
-0.5
-0.4
-0.0
+0.7
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.3
-0.6
-0.2
-0.2
+0.8
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.3
-0.5
-0.0
-0.2
+0.9
carbon source
R2A with sodium pyruvate
+0.3
+0.1
-0.3
+0.6
-0.2
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.6
+0.0
-0.5
+0.2
+0.4
stress
ALP with Fusidic 0.02 mg/ml
+0.8
-0.1
+0.3
-0.4
+0.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.3
+0.3
+0.5
-0.1
+0.4
stress
ALP with Fusidic 0.007 mg/ml
+0.9
-0.1
+0.8
-0.2
+0.0
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.4
+0.3
+0.6
+0.0
+0.3
stress
ALP with Fusidic 0.01 mg/ml
+1.1
-0.0
+1.0
+0.3
-0.0
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