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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_0931 and Dsui_0932 are separated by 15 nucleotides
Dsui_0932 and Dsui_0933 are separated by 196 nucleotides
Dsui_0933 and Dsui_0934 are separated by 167 nucleotides
Dsui_0934 and Dsui_0935 are separated by 107 nucleotides
Dsui_0931: Dsui_0931 - thiol-disulfide isomerase-like thioredoxin, at 959,966 to 960,472
_0931
Dsui_0932: Dsui_0932 - hypothetical protein, at 960,488 to 961,192
_0932
Dsui_0933: Dsui_0933 - DNA/RNA helicase, superfamily I, at 961,389 to 963,398
_0933
Dsui_0934: Dsui_0934 - hypothetical protein, at 963,566 to 963,862
_0934
Dsui_0935: Dsui_0935 - cytochrome c5, at 963,970 to 964,413
_0935
Group
Condition
Dsui
_0931
Dsui
_0932
Dsui
_0933
Dsui
_0934
Dsui
_0935
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.1
-0.3
N.D.
N.D.
-2.8
anaerobic
Anaerobic growth in rich media with perchlorate electron acceptor
-0.3
-0.2
N.D.
N.D.
-2.2
carbon source
R2A with sodium pyruvate
-0.2
-0.5
N.D.
N.D.
-1.3
anaerobic
Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S)
-0.1
-0.2
N.D.
N.D.
-1.3
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.1
-0.2
N.D.
N.D.
-1.0
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.2
-0.2
N.D.
N.D.
-1.0
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-0.1
-0.1
N.D.
N.D.
-0.9
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.2
-0.4
N.D.
N.D.
-0.6
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.2
-0.1
N.D.
N.D.
-1.1
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.1
-0.0
N.D.
N.D.
-1.1
carbon source
R2A with sodium pyruvate
+0.1
-0.6
N.D.
N.D.
-0.4
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.1
+0.1
N.D.
N.D.
-0.8
stress
rich media with sodium chlorite 0.16 mM
+0.1
+0.1
N.D.
N.D.
-1.1
carbon source
L-Lactate (C)
-0.3
+0.1
N.D.
N.D.
-0.6
stress
rich media with sodium chlorite 0.16 mM
-0.2
+0.1
N.D.
N.D.
-0.7
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.1
-0.1
N.D.
N.D.
-0.8
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.1
+0.1
N.D.
N.D.
-0.9
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.1
+0.0
N.D.
N.D.
-0.8
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.3
+0.0
N.D.
N.D.
-0.9
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.2
-0.3
N.D.
N.D.
-0.4
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.3
-0.0
N.D.
N.D.
-0.7
stress
ALP with Cobalt chloride 0.2 mM
-0.4
-0.5
N.D.
N.D.
+0.6
stress
ALP with nitrite 0.45 mM
+0.2
+0.2
N.D.
N.D.
-0.5
carbon source
defined media with 40 mM sodium acetate
+0.2
+0.2
N.D.
N.D.
-0.5
alp rich
rich media
-0.4
+0.2
N.D.
N.D.
+0.3
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.4
+0.1
N.D.
N.D.
+0.5
stress
ALP with Fusidic 0.01 mg/ml
+0.4
-0.4
N.D.
N.D.
+0.3
anaerobic
Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
+0.1
-0.3
N.D.
N.D.
+0.6
stress
ALP with Cobalt chloride 0.25 mM
+0.2
+0.2
N.D.
N.D.
+0.7
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
+0.3
+0.2
N.D.
N.D.
+1.1
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