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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_0917 and Dsui_0918 overlap by 4 nucleotides
Dsui_0918 and Dsui_0919 are separated by 336 nucleotides
Dsui_0919 and Dsui_0920 overlap by 4 nucleotides
Dsui_0920 and Dsui_0921 overlap by 4 nucleotides
Dsui_0917: Dsui_0917 - integrase family protein, at 939,922 to 941,823
_0917
Dsui_0918: Dsui_0918 - TnsA endonuclease N terminal protein, at 941,820 to 942,467
_0918
Dsui_0919: Dsui_0919 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 942,804 to 943,955
_0919
Dsui_0920: Dsui_0920 - fructose-2,6-bisphosphatase, at 943,952 to 944,620
_0920
Dsui_0921: Dsui_0921 - PAS domain S-box, at 944,617 to 948,909
_0921
Group
Condition
Dsui
_0917
Dsui
_0918
Dsui
_0919
Dsui
_0920
Dsui
_0921
stress
ALP with nitrite 0.15 mM
-0.9
-0.3
-1.1
-0.7
-0.8
stress
ALP with nitrite 0.3 mM
-0.9
-0.2
-0.7
-0.7
-1.2
stress
ALP with nitrate 50 mM
-0.9
-0.3
-0.5
-0.7
-1.1
stress
ALP with perchlorate 12 mM
-0.5
-0.8
-0.8
-0.4
-1.0
stress
ALP with Thallium(I) acetate 0.003 mg/ml
-0.9
-0.3
-0.5
-0.6
-1.1
stress
ALP with Thallium(I) acetate 0.002 mg/ml
-0.9
-0.3
-0.5
-0.7
-1.0
stress
ALP with perchlorate 3 mM
-0.3
-0.8
-0.8
-0.3
-1.1
stress
ALP with Zinc 2 mM
-0.7
+0.0
-1.0
-0.6
-0.9
stress
ALP with Thallium(I) acetate 0.004 mg/ml
-0.9
-0.3
-0.7
-0.7
-0.5
stress
ALP with Cobalt chloride 0.2 mM
-0.7
-0.1
-0.6
-0.6
-1.0
alp richb
ALP
-1.0
-0.3
-0.6
-0.7
-0.5
stress
ALP with Zinc 1 mM
-0.8
-0.1
-0.4
-0.6
-1.0
stress
ALP with perchlorate 6 mM
-0.3
-0.8
-0.7
-0.4
-0.8
stress
ALP with Chloride 75 mM
-0.3
-0.7
-0.6
-0.3
-1.0
stress
ALP with Dimethyl Sulfoxide 2 vol%
-0.2
-0.6
-0.8
-0.3
-1.0
stress
ALP with Cobalt chloride 0.25 mM
-0.6
-0.0
-0.6
-0.6
-0.9
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.8
-1.0
-0.8
-0.1
-0.1
stress
ALP with Cisplatin 0.0008 mg/ml
-0.7
-0.1
-0.5
-0.7
-0.7
stress
ALP with sodium fluoride 30 mM
-0.8
-0.1
-0.6
-0.6
-0.7
stress
ALP with sodium fluoride 40 mM
-0.8
-0.2
-0.4
-0.6
-0.7
stress
ALP with Cisplatin 0.0009 mg/ml
-0.7
-0.1
-0.6
-0.7
-0.6
stress
ALP with Nickel (II) chloride 1.5 mM
-0.5
+0.1
-0.4
-0.5
-0.8
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.6
-0.9
-0.6
+0.3
-0.1
anaerobic
anaerobic ALP with 3 all (C)s and 5mM perchlorate
-0.0
+0.1
-0.3
-1.8
+0.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.7
-0.9
-0.6
+0.4
-0.1
stress
ALP with Bacitracin 0.2 mg/ml
-0.3
-0.7
-0.6
+0.5
-0.7
carbon source
L-Lactate (C)
-0.1
-0.4
-0.6
+0.5
-0.9
stress
ALP with nitrite 0.45 mM
-0.9
-0.2
-0.6
+1.0
-0.9
carbon source
D,L-Lactate (C)
-0.1
-0.5
-0.5
+1.2
-0.8
stress
ALP with copper (II) chloride 0.6 mM
+0.4
+1.2
-0.9
+0.2
-0.3
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