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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_0915 and Dsui_0916 are separated by 1 nucleotides
Dsui_0916 and Dsui_0917 overlap by 11 nucleotides
Dsui_0917 and Dsui_0918 overlap by 4 nucleotides
Dsui_0918 and Dsui_0919 are separated by 336 nucleotides
Dsui_0915: Dsui_0915 - hypothetical protein, at 938,018 to 939,034
_0915
Dsui_0916: Dsui_0916 - TniB protein, at 939,036 to 939,932
_0916
Dsui_0917: Dsui_0917 - integrase family protein, at 939,922 to 941,823
_0917
Dsui_0918: Dsui_0918 - TnsA endonuclease N terminal protein, at 941,820 to 942,467
_0918
Dsui_0919: Dsui_0919 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 942,804 to 943,955
_0919
Group
Condition
Dsui
_0915
Dsui
_0916
Dsui
_0917
Dsui
_0918
Dsui
_0919
stress
ALP with perchlorate 12 mM
-1.2
-1.3
-0.5
-0.8
-0.8
stress
ALP with perchlorate 6 mM
-1.1
-1.3
-0.3
-0.8
-0.7
stress
ALP with perchlorate 3 mM
-1.0
-1.2
-0.3
-0.8
-0.8
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.7
-0.7
-0.8
-1.0
-0.8
stress
ALP with Bacitracin 0.2 mg/ml
-1.1
-1.2
-0.3
-0.7
-0.6
stress
ALP with nitrite 0.15 mM
-1.0
-0.5
-0.9
-0.3
-1.1
stress
ALP with Chloride 75 mM
-1.0
-1.1
-0.3
-0.7
-0.6
stress
ALP with Fusidic 0.007 mg/ml
-1.0
-1.2
-0.4
-0.7
-0.2
stress
ALP with Thallium(I) acetate 0.004 mg/ml
-1.0
-0.4
-0.9
-0.3
-0.7
stress
ALP with Dimethyl Sulfoxide 2 vol%
-0.8
-1.0
-0.2
-0.6
-0.8
alp richb
ALP
-1.0
-0.5
-1.0
-0.3
-0.6
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.5
-0.7
-0.7
-0.9
-0.6
stress
ALP with Thallium(I) acetate 0.002 mg/ml
-1.1
-0.5
-0.9
-0.3
-0.5
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.5
-0.5
-0.7
-0.9
-0.6
stress
ALP with nitrate 50 mM
-1.0
-0.5
-0.9
-0.3
-0.5
stress
ALP with Thallium(I) acetate 0.003 mg/ml
-1.0
-0.5
-0.9
-0.3
-0.5
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.5
-0.6
-0.6
-0.9
-0.5
stress
ALP with Fusidic 0.02 mg/ml
-1.1
-1.1
-0.3
-0.6
+0.1
stress
ALP with nitrate 75 mM
-0.9
-0.5
-0.9
-0.1
-0.6
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.4
-0.5
-0.6
-0.9
-0.6
stress
ALP with nitrite 0.3 mM
-0.6
-0.4
-0.9
-0.2
-0.7
stress
ALP with nitrite 0.45 mM
-0.7
-0.4
-0.9
-0.2
-0.6
carbon source
D,L-Lactate (C)
-0.8
-0.9
-0.1
-0.5
-0.5
carbon source
L-Lactate (C)
-0.7
-0.8
-0.1
-0.4
-0.6
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.3
-0.5
-0.5
-0.8
-0.5
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.4
-0.5
-0.6
-0.8
-0.5
stress
ALP with Zinc 1 mM
-1.0
-0.4
-0.8
-0.1
-0.4
stress
ALP with sodium fluoride 40 mM
-0.9
-0.4
-0.8
-0.2
-0.4
stress
ALP with Zinc 2 mM
-0.7
-0.2
-0.7
+0.0
-1.0
stress
ALP with copper (II) chloride 0.6 mM
+0.4
+1.0
+0.4
+1.2
-0.9
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