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Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_0885 and Dsui_0886 are separated by 5 nucleotides
Dsui_0886 and Dsui_0887 are separated by 64 nucleotides
Dsui_0887 and Dsui_0888 are separated by 127 nucleotides
Dsui_0888 and Dsui_0889 are separated by 156 nucleotides
Dsui_0885: Dsui_0885 - hypothetical protein, at 899,084 to 899,620
_0885
Dsui_0886: Dsui_0886 - glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit, at 899,626 to 901,095
_0886
Dsui_0887: Dsui_0887 - glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit, at 901,160 to 901,447
_0887
Dsui_0888: Dsui_0888 - cell shape determining protein, MreB/Mrl family, at 901,575 to 902,618
_0888
Dsui_0889: Dsui_0889 - rod shape-determining protein MreC, at 902,775 to 903,713
_0889
Group
Condition
Dsui
_0885
Dsui
_0886
Dsui
_0887
Dsui
_0888
Dsui
_0889
anaerobic
Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S)
-0.8
N.D.
N.D.
N.D.
N.D.
anaerobic
Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
-0.6
N.D.
N.D.
N.D.
N.D.
anaerobic
Anaerobic growth in rich media with perchlorate electron acceptor, 1000 uM Stressor (H2S) spiked in when cells reach OD 0.5
-0.5
N.D.
N.D.
N.D.
N.D.
anaerobic
Anaero. lactate (C), nitrate electron acceptor
-0.5
N.D.
N.D.
N.D.
N.D.
stress
ALP with Chloride 75 mM
+0.4
N.D.
N.D.
N.D.
N.D.
stress
rich media with sodium chlorite 0.16 mM
+0.4
N.D.
N.D.
N.D.
N.D.
alp rich
rich media
+0.4
N.D.
N.D.
N.D.
N.D.
stress
ALP with perchlorate 3 mM
+0.4
N.D.
N.D.
N.D.
N.D.
alp rich
rich media
+0.4
N.D.
N.D.
N.D.
N.D.
stress
ALP with Zinc 1 mM
+0.4
N.D.
N.D.
N.D.
N.D.
stress
ALP with perchlorate 6 mM
+0.4
N.D.
N.D.
N.D.
N.D.
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.4
N.D.
N.D.
N.D.
N.D.
carbon source
D-Lactate (C)
+0.4
N.D.
N.D.
N.D.
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.5
N.D.
N.D.
N.D.
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.5
N.D.
N.D.
N.D.
N.D.
carbon source
D,L-Lactate (C)
+0.5
N.D.
N.D.
N.D.
N.D.
stress
rich media with sodium chlorite 0.16 mM
+0.5
N.D.
N.D.
N.D.
N.D.
stress
ALP with Nickel (II) chloride 2.5 mM
+0.6
N.D.
N.D.
N.D.
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.6
N.D.
N.D.
N.D.
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.6
N.D.
N.D.
N.D.
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.6
N.D.
N.D.
N.D.
N.D.
carbon source
defined media with 40 mM sodium acetate
+0.7
N.D.
N.D.
N.D.
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.7
N.D.
N.D.
N.D.
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.7
N.D.
N.D.
N.D.
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.7
N.D.
N.D.
N.D.
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.7
N.D.
N.D.
N.D.
N.D.
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.8
N.D.
N.D.
N.D.
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.8
N.D.
N.D.
N.D.
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.8
N.D.
N.D.
N.D.
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.9
N.D.
N.D.
N.D.
N.D.
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