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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_0724 and Dsui_0725 are separated by 99 nucleotides
Dsui_0725 and Dsui_0726 are separated by 2 nucleotides
Dsui_0726 and Dsui_0727 are separated by 35 nucleotides
Dsui_0727 and Dsui_0728 are separated by 101 nucleotides
Dsui_0724: Dsui_0724 - ABC-type multidrug transport system, ATPase component, at 719,078 to 720,001
_0724
Dsui_0725: Dsui_0725 - putative hydrolase of the alpha/beta superfamily, at 720,101 to 720,739
_0725
Dsui_0726: Dsui_0726 - ferredoxin, at 720,742 to 721,050
_0726
Dsui_0727: Dsui_0727 - putative integral membrane protein, at 721,086 to 722,141
_0727
Dsui_0728: Dsui_0728 - threonine ammonia-lyase, biosynthetic, long form, at 722,243 to 723,754
_0728
Group
Condition
Dsui
_0724
Dsui
_0725
Dsui
_0726
Dsui
_0727
Dsui
_0728
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.0
-4.9
-1.1
-1.0
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.0
-4.9
-0.8
-0.9
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.1
-5.3
-0.4
-0.7
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.1
-3.8
-0.4
-0.9
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.0
-3.1
-0.5
-1.0
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.2
-3.2
-0.5
-1.0
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
-3.0
-0.5
-1.0
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
-3.2
-0.3
-0.8
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.1
-2.9
-0.4
-0.8
N.D.
carbon source
defined media with 30 mM sodium lactate
-0.2
-2.2
-0.9
-0.5
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.3
-1.6
-1.2
-0.5
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.2
-2.3
-0.6
-0.9
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.2
-2.0
-0.5
-0.9
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.4
-2.4
-0.4
-0.8
N.D.
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-0.1
-0.8
-0.6
-1.5
N.D.
alp rich
rich media
-0.2
-1.6
-0.7
-0.5
N.D.
carbon source
pyruvate (C)
+0.2
-2.0
-0.3
-0.7
N.D.
carbon source
D-Lactate (C)
+0.1
-2.1
-0.1
-0.6
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.1
-1.5
-0.8
-0.2
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.1
-1.8
-0.1
-0.5
N.D.
carbon source
pyruvate (C)
+0.0
-1.7
-0.3
-0.4
N.D.
carbon source
propionate (C)
-0.1
-1.8
+0.0
-0.6
N.D.
carbon source
defined media with 30 mM sodium lactate
-0.3
-1.3
-0.4
-0.3
N.D.
carbon source
D,L-Lactate (C)
+0.1
-1.8
+0.1
-0.4
N.D.
carbon source
D-Lactate (C)
+0.0
-1.5
-0.2
-0.4
N.D.
carbon source
D,L-Lactate (C)
+0.0
-1.6
+0.3
-0.4
N.D.
stress
ALP with Fusidic 0.007 mg/ml
+0.4
+0.6
+0.3
-0.7
N.D.
stress
ALP with Fusidic 0.02 mg/ml
+0.3
+0.6
+0.6
-0.8
N.D.
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.7
+1.1
-0.2
-0.6
N.D.
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.7
+1.4
+0.1
-0.2
N.D.
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