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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_0682 and Dsui_0683 are separated by 161 nucleotides
Dsui_0683 and Dsui_0684 are separated by 105 nucleotides
Dsui_0684 and Dsui_0685 are separated by 30 nucleotides
Dsui_0685 and Dsui_0686 are separated by 8 nucleotides
Dsui_0682: Dsui_0682 - 5,10-methenyltetrahydrofolate synthetase, at 679,534 to 680,127
_0682
Dsui_0683: Dsui_0683 - soluble lytic murein transglycosylase-like protein, at 680,289 to 682,277
_0683
Dsui_0684: Dsui_0684 - putative nucleoside-diphosphate sugar epimerase, at 682,383 to 683,342
_0684
Dsui_0685: Dsui_0685 - glutathione S-transferase, at 683,373 to 684,008
_0685
Dsui_0686: Dsui_0686 - tRNA nucleotidyltransferase/poly(A) polymerase, at 684,017 to 685,237
_0686
Group
Condition
Dsui
_0682
Dsui
_0683
Dsui
_0684
Dsui
_0685
Dsui
_0686
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
-0.8
-1.7
-2.4
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
-0.8
-1.8
-1.9
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
N.D.
-0.9
-1.6
-1.8
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
-1.0
-1.5
-1.7
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
-0.7
-1.7
-1.6
N.D.
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
N.D.
-0.8
-1.9
-1.3
N.D.
anaerobic
Anaero. lactate (C), chlorate electron acceptor
N.D.
-0.3
-1.2
-2.2
N.D.
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
N.D.
+0.0
-0.9
-2.7
N.D.
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
-0.8
-1.3
-1.4
N.D.
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
N.D.
-0.2
-0.9
-2.4
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
N.D.
-0.6
-1.2
-1.7
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
-0.5
-1.5
-1.2
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
-0.8
-1.5
-0.7
N.D.
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
N.D.
-0.1
-0.9
-2.0
N.D.
No stressor control+ 10 mM ClO4 and 20 mM lactate
N.D.
-0.5
-1.4
-1.0
N.D.
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
N.D.
-0.4
-1.3
-1.1
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
N.D.
-1.1
-1.1
-0.6
N.D.
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
N.D.
-0.4
-0.2
-2.1
N.D.
anaerobic
Anaero. lactate (C), nitrate electron acceptor
N.D.
-0.1
-0.6
-1.9
N.D.
stress
ALP with Fusidic 0.02 mg/ml
N.D.
-2.2
+0.3
-0.5
N.D.
stress
ALP with copper (II) chloride 0.6 mM
N.D.
-3.0
+1.2
-0.6
N.D.
anaerobic
Anaero. lactate (C), chlorate electron acceptor
N.D.
-0.0
-1.2
-1.2
N.D.
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
N.D.
-0.3
-0.9
-1.2
N.D.
stress
ALP with Bacitracin 0.2 mg/ml
N.D.
-1.9
+0.3
-0.7
N.D.
carbon source
a-Ketoglutaric (C)
N.D.
-1.7
+0.1
-0.6
N.D.
stress
ALP with Fusidic 0.007 mg/ml
N.D.
-2.1
+0.2
-0.3
N.D.
stress
ALP with Fusidic 0.01 mg/ml
N.D.
-2.2
+0.2
-0.0
N.D.
carbon source
a-Ketoglutaric (C)
N.D.
-1.8
+0.3
-0.4
N.D.
stress
ALP with Cisplatin 0.0008 mg/ml
N.D.
-1.2
+0.3
-0.8
N.D.
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
N.D.
-1.6
-0.6
+0.7
N.D.
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