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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_0639 and Dsui_0640 are separated by 182 nucleotides
Dsui_0640 and Dsui_0641 overlap by 4 nucleotides
Dsui_0641 and Dsui_0642 are separated by 61 nucleotides
Dsui_0642 and Dsui_0643 are separated by 236 nucleotides
Dsui_0639: Dsui_0639 - hypothetical protein, at 632,708 to 632,929
_0639
Dsui_0640: Dsui_0640 - 5,10-methylenetetrahydrofolate reductase, at 633,112 to 633,951
_0640
Dsui_0641: Dsui_0641 - putative rRNA methylase, at 633,948 to 634,205
_0641
Dsui_0642: Dsui_0642 - adenosylhomocysteinase, at 634,267 to 635,667
_0642
Dsui_0643: Dsui_0643 - HD-GYP domain-containing protein, at 635,904 to 637,133
_0643
Group
Condition
Dsui
_0639
Dsui
_0640
Dsui
_0641
Dsui
_0642
Dsui
_0643
stress
ALP with copper (II) chloride 0.6 mM
-0.1
N.D.
-1.8
N.D.
-1.1
carbon source
propionate (C)
+0.1
N.D.
-2.4
N.D.
-0.2
stress
ALP with Nickel (II) chloride 1.5 mM
-0.2
N.D.
-1.5
N.D.
-0.4
stress
ALP with Cobalt chloride 0.2 mM
+0.1
N.D.
-1.7
N.D.
-0.2
stress
ALP with Nickel (II) chloride 3.5 mM
+0.2
N.D.
-1.4
N.D.
-0.5
carbon source
D-Lactate (C)
+0.1
N.D.
-1.4
N.D.
-0.2
carbon source
pyruvate (C)
+0.1
N.D.
-1.6
N.D.
-0.2
stress
ALP with Thallium(I) acetate 0.004 mg/ml
+0.0
N.D.
-1.2
N.D.
-0.4
stress
ALP with Cobalt chloride 0.25 mM
+0.0
N.D.
-1.2
N.D.
-0.3
anaerobic
anaerobic ALP with 3 all (C)s and 5mM perchlorate
+0.0
N.D.
-1.5
N.D.
+0.1
stress
ALP with nitrite 0.15 mM
+0.2
N.D.
-1.4
N.D.
-0.2
carbon source
L-Lactate (C)
+0.3
N.D.
-1.4
N.D.
-0.2
stress
ALP with Zinc 2 mM
-0.1
N.D.
-0.7
N.D.
-0.4
carbon source
propionate (C)
-0.2
N.D.
-1.0
N.D.
+0.0
stress
ALP with sodium fluoride 30 mM
-0.0
N.D.
-1.0
N.D.
-0.0
ALP with 3 all (C)s
-0.0
N.D.
-0.8
N.D.
-0.2
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-0.2
N.D.
-0.5
N.D.
-0.2
carbon source
D-Lactate (C)
+0.4
N.D.
-1.3
N.D.
-0.0
stress
ALP with Thallium(I) acetate 0.002 mg/ml
+0.3
N.D.
-0.8
N.D.
-0.3
stress
ALP with Bacitracin 0.2 mg/ml
+0.2
N.D.
-0.8
N.D.
-0.1
carbon source
R2A with sodium pyruvate
-0.0
N.D.
-0.9
N.D.
+0.2
carbon source
pyruvate (C)
+0.1
N.D.
-0.8
N.D.
-0.0
carbon source
D,L-Lactate (C)
+0.2
N.D.
-0.8
N.D.
-0.1
carbon source
a-Ketoglutaric (C)
+0.2
N.D.
-0.8
N.D.
-0.1
stress
ALP with nitrate 75 mM
+0.5
N.D.
-0.5
N.D.
-0.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.4
N.D.
-0.5
N.D.
-0.1
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+0.3
N.D.
-0.5
N.D.
+0.3
stress
ALP with Fusidic 0.02 mg/ml
+0.3
N.D.
+0.4
N.D.
-0.4
stress
ALP with Fusidic 0.01 mg/ml
+0.2
N.D.
+0.5
N.D.
-0.2
stress
ALP with Nickel (II) chloride 2.5 mM
+0.5
N.D.
+0.6
N.D.
-0.0
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