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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_0628 and Dsui_0629 overlap by 4 nucleotides
Dsui_0629 and Dsui_0630 are separated by 72 nucleotides
Dsui_0630 and Dsui_0631 are separated by 189 nucleotides
Dsui_0631 and Dsui_0632 are separated by 50 nucleotides
Dsui_0628: Dsui_0628 - ABC-type branched-chain amino acid transport system, permease component, at 621,439 to 622,515
_0628
Dsui_0629: Dsui_0629 - branched-chain amino acid ABC-type transport system, permease component, at 622,512 to 623,435
_0629
Dsui_0630: Dsui_0630 - ABC-type branched-chain amino acid transport system, periplasmic component, at 623,508 to 624,812
_0630
Dsui_0631: Dsui_0631 - cytochrome c551/c552, at 625,002 to 625,310
_0631
Dsui_0632: Dsui_0632 - thioredoxin domain-containing protein, at 625,361 to 627,409
_0632
Group
Condition
Dsui
_0628
Dsui
_0629
Dsui
_0630
Dsui
_0631
Dsui
_0632
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.9
-0.4
+0.2
-1.5
-0.3
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.6
-0.2
+0.1
-1.4
-0.2
stress
ALP with Nickel (II) chloride 1.5 mM
-0.4
-0.8
-0.2
-0.5
-0.4
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.7
-0.4
+0.1
-0.9
-0.2
stress
ALP with perchlorate 6 mM
-1.2
-0.3
-0.0
-0.5
+0.1
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.4
-0.3
+0.2
-1.1
-0.1
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.8
-0.4
-0.1
-0.1
-0.2
stress
ALP with sodium fluoride 40 mM
-0.4
-0.6
-0.0
-0.4
-0.1
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.7
-0.5
+0.1
-0.1
-0.3
stress
ALP with sodium fluoride 30 mM
-0.7
-0.7
+0.1
+0.1
-0.0
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.7
-0.3
+0.1
-0.2
-0.2
stress
ALP with Chloride 75 mM
-0.9
-0.4
+0.0
+0.1
-0.0
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.7
-0.3
+0.2
-0.2
-0.1
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.7
-0.2
+0.2
+0.0
-0.2
stress
ALP with Cobalt chloride 0.25 mM
-0.4
-0.6
+0.1
+0.1
-0.2
anaerobic
anaerobic ALP with 3 all (C)s and 5mM perchlorate
+0.2
+0.1
-0.3
-0.9
-0.0
carbon source
a-Ketoglutaric (C)
-0.5
-0.5
-0.1
+0.3
+0.0
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.7
-0.2
+0.2
+0.1
-0.1
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-0.4
-0.2
+0.0
+0.6
-0.6
stress
ALP with Cobalt chloride 0.2 mM
-0.4
-0.5
+0.2
+0.2
-0.1
stress
ALP with Zinc 1 mM
-0.5
-0.5
+0.1
+0.3
+0.1
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
+0.1
-0.2
+0.1
+0.3
-0.7
stress
ALP with Fusidic 0.02 mg/ml
-0.0
-0.3
-0.2
+0.7
-0.3
stress
ALP with Fusidic 0.01 mg/ml
-0.1
+0.3
-0.2
+0.5
-0.3
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.0
+0.4
+0.7
-0.6
-0.3
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.4
+0.4
+0.6
-0.2
-0.5
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.3
+0.2
+0.8
+0.3
-0.1
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.4
+0.5
+0.8
+0.2
-0.4
stress
ALP with Cisplatin 0.0009 mg/ml
+0.3
+0.3
+0.3
+0.5
+0.2
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.7
+0.4
+0.8
+0.8
-0.3
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