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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
1
2
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4
5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_0541 and Dsui_0542 are separated by 117 nucleotides
Dsui_0542 and Dsui_0543 are separated by 228 nucleotides
Dsui_0543 and Dsui_0544 are separated by 124 nucleotides
Dsui_0544 and Dsui_0545 are separated by 94 nucleotides
Dsui_0541: Dsui_0541 - cobalamin biosynthesis protein CobD, at 545,123 to 546,094
_0541
Dsui_0542: Dsui_0542 - cobyric acid synthase CobQ, at 546,212 to 547,705
_0542
Dsui_0543: Dsui_0543 - malic enzyme, at 547,934 to 550,210
_0543
Dsui_0544: Dsui_0544 - flagellar basal body-associated protein, at 550,335 to 550,724
_0544
Dsui_0545: Dsui_0545 - tRNA-Thr, at 550,819 to 550,893
_0545
Group
Condition
Dsui
_0541
Dsui
_0542
Dsui
_0543
Dsui
_0544
Dsui
_0545
carbon source
propionate (C)
-1.5
-1.9
-1.2
+0.1
N.D.
carbon source
a-Ketoglutaric (C)
-0.1
-1.3
-2.0
-0.7
N.D.
carbon source
propionate (C)
-1.3
-1.4
-1.2
-0.2
N.D.
carbon source
a-Ketoglutaric (C)
-0.0
-1.3
-1.8
-0.1
N.D.
stress
ALP with Zinc 2 mM
-0.6
-1.9
-0.4
+0.1
N.D.
alp richb
ALP
-0.3
-1.1
-0.9
-0.2
N.D.
stress
ALP with Cobalt chloride 0.2 mM
-0.8
-1.3
-0.2
-0.3
N.D.
stress
ALP with nitrite 0.3 mM
-0.1
-0.7
-1.3
-0.3
N.D.
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-0.3
-0.2
-2.1
+0.3
N.D.
stress
ALP with sodium fluoride 30 mM
-0.1
-1.0
-0.9
-0.3
N.D.
stress
ALP with nitrite 0.45 mM
-0.3
-0.8
-1.6
+0.5
N.D.
stress
ALP with Cobalt chloride 0.25 mM
-1.2
-1.5
+0.4
+0.1
N.D.
alp rich
rich media
+0.3
-0.1
-1.5
-0.6
N.D.
stress
ALP with nitrate 75 mM
-0.5
-1.6
+0.3
-0.1
N.D.
stress
ALP with Cisplatin 0.0009 mg/ml
-0.3
-1.5
+0.2
-0.3
N.D.
stress
ALP with Thallium(I) acetate 0.003 mg/ml
-0.2
-1.8
+0.1
+0.1
N.D.
carbon source
L-Lactate (C)
-0.3
-1.5
+0.2
-0.3
N.D.
stress
ALP with Chloride 75 mM
-0.3
-1.2
+0.2
-0.5
N.D.
stress
ALP with nitrate 50 mM
-0.7
-1.4
+0.1
+0.4
N.D.
stress
ALP with Nickel (II) chloride 2.5 mM
-0.9
-1.4
+0.6
+0.3
N.D.
anaerobic
anaerobic ALP with 3 all (C)s and 5mM perchlorate
-0.2
-0.1
-1.7
+0.7
N.D.
stress
ALP with Cisplatin 0.0008 mg/ml
-0.2
-1.3
+0.1
+1.0
N.D.
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.4
-0.8
+0.4
+0.5
N.D.
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
-0.1
-0.4
+1.4
-0.8
N.D.
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
-0.2
-0.5
+1.4
-0.3
N.D.
stress
ALP with copper (II) chloride 0.6 mM
-0.6
-1.0
+1.0
+1.3
N.D.
stress
ALP with Fusidic 0.007 mg/ml
+0.2
-0.4
+1.8
-0.1
N.D.
stress
ALP with Fusidic 0.01 mg/ml
+0.1
-0.2
+1.9
-0.1
N.D.
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.4
+0.1
+1.5
+0.3
N.D.
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+0.3
+0.3
+1.3
+0.5
N.D.
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