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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_0538 and Dsui_0539 are separated by 9 nucleotides
Dsui_0539 and Dsui_0540 overlap by 4 nucleotides
Dsui_0540 and Dsui_0541 overlap by 8 nucleotides
Dsui_0541 and Dsui_0542 are separated by 117 nucleotides
Dsui_0538: Dsui_0538 - hypothetical protein, at 542,492 to 543,235
_0538
Dsui_0539: Dsui_0539 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 543,245 to 544,129
_0539
Dsui_0540: Dsui_0540 - L-threonine-O-3-phosphate decarboxylase, at 544,126 to 545,130
_0540
Dsui_0541: Dsui_0541 - cobalamin biosynthesis protein CobD, at 545,123 to 546,094
_0541
Dsui_0542: Dsui_0542 - cobyric acid synthase CobQ, at 546,212 to 547,705
_0542
Group
Condition
Dsui
_0538
Dsui
_0539
Dsui
_0540
Dsui
_0541
Dsui
_0542
carbon source
propionate (C)
-1.1
-0.1
-0.5
-1.5
-1.9
carbon source
propionate (C)
-0.7
-0.5
-0.9
-1.3
-1.4
stress
ALP with Zinc 2 mM
-0.4
-0.8
-0.3
-0.6
-1.9
stress
ALP with Cobalt chloride 0.25 mM
-0.8
-0.2
-0.3
-1.2
-1.5
stress
ALP with Cobalt chloride 0.2 mM
-0.4
-0.2
-0.7
-0.8
-1.3
carbon source
R2A with sodium pyruvate
-1.9
-0.3
-1.1
+0.0
+0.2
stress
ALP with Chloride 75 mM
-1.1
-0.3
-0.1
-0.3
-1.2
stress
ALP with Nickel (II) chloride 2.5 mM
+0.6
-0.8
-0.4
-0.9
-1.4
carbon source
L-Lactate (C)
-1.2
-0.1
+0.2
-0.3
-1.5
stress
ALP with Bacitracin 0.2 mg/ml
-1.1
-0.3
-0.1
-0.3
-0.9
carbon source
D-Lactate (C)
-1.1
-0.5
+0.2
-0.4
-0.9
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.1
-0.1
-0.6
-0.4
-0.4
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.4
-0.1
-0.7
-0.8
-0.6
stress
ALP with nitrate 50 mM
-0.2
-0.0
-0.2
-0.7
-1.4
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-0.9
-0.0
-0.5
-0.6
-0.5
carbon source
D,L-Lactate (C)
-1.1
-0.2
-0.0
-0.5
-0.7
stress
ALP with Nickel (II) chloride 1.5 mM
-0.9
-0.2
-0.2
-0.2
-0.9
stress
ALP with copper (II) chloride 0.6 mM
+0.1
-0.4
-0.5
-0.6
-1.0
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.2
-0.2
-1.1
-0.4
-0.5
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-0.5
+0.0
-0.7
-0.4
-0.8
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.5
-0.0
-0.7
-0.6
-0.5
No stressor control+ 10 mM ClO4 and 20 mM lactate
-0.5
-0.1
-0.6
-0.7
-0.4
stress
ALP with Thallium(I) acetate 0.003 mg/ml
+0.0
+0.0
-0.3
-0.2
-1.8
carbon source
D-Lactate (C)
-0.6
-0.2
+0.3
-0.2
-1.2
stress
ALP with Zinc 1 mM
-0.6
+0.0
+0.2
-0.3
-1.1
carbon source
L-Lactate (C)
-0.5
-0.4
+0.2
-0.3
-0.8
carbon source
a-Ketoglutaric (C)
-0.5
-0.3
+0.4
-0.1
-1.3
stress
ALP with nitrate 75 mM
+0.1
+0.0
+0.2
-0.5
-1.6
stress
ALP with Cisplatin 0.0009 mg/ml
+0.4
-0.3
+0.3
-0.3
-1.5
carbon source
defined media with 30 mM sodium lactate
-1.6
+0.3
+0.3
+0.2
+0.1
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