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Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
1
2
3
4
5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_0500 and Dsui_0501 are separated by 5 nucleotides
Dsui_0501 and Dsui_0502 are separated by 34 nucleotides
Dsui_0502 and Dsui_0503 are separated by 46 nucleotides
Dsui_0503 and Dsui_0504 overlap by 4 nucleotides
Dsui_0500: Dsui_0500 - (p)ppGpp synthetase, RelA/SpoT family, at 501,253 to 503,484
_0500
Dsui_0501: Dsui_0501 - glycine/D-amino acid oxidase, deaminating, at 503,490 to 504,740
_0501
Dsui_0502: Dsui_0502 - enoyl-CoA hydratase/carnithine racemase, at 504,775 to 505,566
_0502
Dsui_0503: Dsui_0503 - Mg-dependent DNase, at 505,613 to 506,473
_0503
Dsui_0504: Dsui_0504 - putative membrane protein, at 506,470 to 507,375
_0504
Group
Condition
Dsui
_0500
Dsui
_0501
Dsui
_0502
Dsui
_0503
Dsui
_0504
stress
ALP with nitrate 75 mM
-0.7
N.D.
-0.2
-0.4
-1.3
stress
ALP with nitrate 50 mM
-1.3
N.D.
-0.1
-0.1
-0.6
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-1.4
N.D.
-0.1
-0.5
-0.1
carbon source
D,L-Lactate (C)
-1.5
N.D.
-0.1
-0.1
-0.5
alp richb
ALP
-1.7
N.D.
+0.1
+0.2
-0.6
stress
ALP with Cobalt chloride 0.2 mM
-1.3
N.D.
+0.0
-0.2
-0.5
stress
ALP with Zinc 1 mM
-1.6
N.D.
-0.0
+0.2
-0.4
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-1.6
N.D.
-0.0
-0.1
-0.1
carbon source
defined media with 40 mM sodium acetate
-1.3
N.D.
-0.1
-0.0
-0.3
alp rich
rich media
-1.4
N.D.
+0.1
-0.1
-0.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
-1.9
N.D.
+0.3
+0.0
-0.0
stress
rich media with sodium chlorite 0.16 mM
-1.4
N.D.
+0.1
+0.2
-0.4
carbon source
R2A with sodium pyruvate
-1.2
N.D.
+0.1
-0.6
+0.2
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.7
N.D.
+0.2
+0.1
+0.1
No stressor control+ 10 mM ClO4 and 20 mM lactate
-1.5
N.D.
+0.2
-0.1
+0.1
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.6
N.D.
+0.2
+0.0
+0.2
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.3
N.D.
+0.2
-0.3
+0.2
No stressor control+ 10 mM ClO4 and 20 mM lactate
-1.5
N.D.
+0.3
+0.2
+0.0
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.7
N.D.
+0.4
+0.0
+0.2
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.5
N.D.
+0.4
+0.0
+0.1
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-1.8
N.D.
+0.3
+0.5
+0.1
alp rich
rich media
-1.7
N.D.
+0.5
+0.3
+0.1
carbon source
defined media with 30 mM sodium lactate
-1.5
N.D.
+0.2
+0.6
-0.0
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-1.2
N.D.
+0.4
+0.2
-0.1
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+1.4
N.D.
-0.2
-0.4
+0.2
stress
ALP with copper (II) chloride 0.6 mM
+2.2
N.D.
-0.3
+0.3
-0.6
anaerobic
Anaero. lactate (C), chlorate electron acceptor
+1.7
N.D.
+0.1
-0.1
+0.1
stress
ALP with Fusidic 0.02 mg/ml
+3.8
N.D.
-0.1
-0.3
-0.1
stress
ALP with Fusidic 0.01 mg/ml
+4.4
N.D.
-0.0
-0.2
-0.4
stress
ALP with Fusidic 0.007 mg/ml
+4.4
N.D.
-0.3
+0.3
+0.1
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