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Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_0489 and Dsui_0490 are separated by 68 nucleotides
Dsui_0490 and Dsui_0491 overlap by 4 nucleotides
Dsui_0491 and Dsui_0492 are separated by 144 nucleotides
Dsui_0492 and Dsui_0493 are separated by 5 nucleotides
Dsui_0489: Dsui_0489 - DNA-binding regulatory protein, YebC/PmpR family, at 491,547 to 492,272
_0489
Dsui_0490: Dsui_0490 - putative ATPase, at 492,341 to 493,861
_0490
Dsui_0491: Dsui_0491 - putative oxygen-independent coproporphyrinogen III oxidase, at 493,858 to 495,096
_0491
Dsui_0492: Dsui_0492 - non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family, at 495,241 to 495,831
_0492
Dsui_0493: Dsui_0493 - hypothetical protein, at 495,837 to 496,745
_0493
Group
Condition
Dsui
_0489
Dsui
_0490
Dsui
_0491
Dsui
_0492
Dsui
_0493
stress
ALP with Cobalt chloride 0.25 mM
-6.2
-0.2
-0.5
-0.0
+0.2
stress
ALP with Cobalt chloride 0.2 mM
-4.3
-0.2
-0.5
+0.2
+0.1
anaerobic
anaerobic ALP with 3 all (C)s and 5mM perchlorate
-0.8
-0.2
-0.7
-1.0
-0.4
stress
ALP with copper (II) chloride 0.6 mM
-2.0
-0.5
+0.0
-0.1
+0.2
stress
ALP with Fusidic 0.02 mg/ml
-1.1
-0.2
-1.2
+0.0
+0.1
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-0.1
-0.1
-0.4
-1.5
-0.3
anaerobic
Anaerobic growth in rich media with nitrate electron acceptor
-1.1
-0.0
-0.1
-1.1
+0.1
carbon source
R2A with sodium pyruvate
-1.1
-0.3
+0.0
-0.8
+0.0
stress
ALP with Fusidic 0.007 mg/ml
-1.0
-0.5
-0.9
+0.2
+0.1
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-0.7
-0.0
-0.2
-0.8
-0.2
stress
ALP with Fusidic 0.01 mg/ml
-1.3
+0.2
-0.9
+0.2
+0.0
carbon source
defined media with 30 mM sodium lactate
-0.4
-0.2
-0.3
-0.6
-0.3
carbon source
R2A with sodium pyruvate
-1.0
-0.3
+0.1
-0.5
+0.0
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-0.3
-0.4
-0.0
-0.9
-0.0
stress
ALP with Nickel (II) chloride 3.5 mM
-1.0
-0.4
-0.2
+0.1
-0.2
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-0.3
-0.1
-0.2
-1.0
-0.0
stress
rich media with sodium chlorite 0.16 mM
-0.5
-0.4
-0.3
-0.4
+0.1
stress
ALP with Zinc 2 mM
-0.7
-0.5
-0.4
+0.1
+0.1
stress
ALP with Cisplatin 0.0009 mg/ml
-0.7
-0.3
+0.2
+0.1
-0.3
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.5
-0.1
-0.2
-1.4
+0.1
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
+0.0
-0.1
-1.2
+0.2
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
+0.1
-0.1
-1.2
+0.4
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.7
-0.0
-0.1
-1.1
+0.0
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.7
+0.1
-0.2
-1.0
-0.0
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
+0.2
+0.1
-0.0
-1.0
+0.4
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
+0.5
+0.1
-0.3
-1.1
+0.4
No stressor control+ 10 mM ClO4 and 20 mM lactate
+0.5
-0.0
-0.0
-0.8
+0.2
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
+0.9
+0.2
-0.1
-0.6
+0.1
stress
ALP with Cisplatin 0.0007 mg/ml
-0.4
+0.2
+0.0
+0.1
+0.8
stress
ALP with Nickel (II) chloride 2.5 mM
-0.8
+0.5
+0.0
+0.5
+0.7
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