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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
1
2
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_0292 and Dsui_0293 are separated by 61 nucleotides
Dsui_0293 and Dsui_0294 are separated by 70 nucleotides
Dsui_0294 and Dsui_0295 are separated by 19 nucleotides
Dsui_0295 and Dsui_0296 overlap by 4 nucleotides
Dsui_0292: Dsui_0292 - putative signal transduction protein containing EAL and modified HD-GYP domains, at 291,307 to 292,698
_0292
Dsui_0293: Dsui_0293 - PilZ domain-containing protein, at 292,760 to 293,338
_0293
Dsui_0294: Dsui_0294 - D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family, at 293,409 to 294,920
_0294
Dsui_0295: Dsui_0295 - hypothetical protein, at 294,940 to 297,729
_0295
Dsui_0296: Dsui_0296 - hypothetical protein, at 297,726 to 298,508
_0296
Group
Condition
Dsui
_0292
Dsui
_0293
Dsui
_0294
Dsui
_0295
Dsui
_0296
stress
ALP with perchlorate 3 mM
-1.2
+0.1
-0.7
-1.1
N.D.
stress
ALP with perchlorate 12 mM
-0.9
+0.0
-0.5
-1.0
N.D.
stress
ALP with Nickel (II) chloride 1.5 mM
-0.2
-0.1
-0.5
-1.5
N.D.
carbon source
D-Lactate (C)
-1.2
-0.1
-0.4
-0.5
N.D.
carbon source
D,L-Lactate (C)
-0.7
+0.1
-0.4
-1.1
N.D.
stress
ALP with Cobalt chloride 0.25 mM
-0.9
+0.2
-0.4
-0.9
N.D.
carbon source
a-Ketoglutaric (C)
-0.4
+0.1
-0.6
-1.0
N.D.
stress
ALP with Nickel (II) chloride 3.5 mM
-0.6
+0.0
-0.2
-1.1
N.D.
stress
ALP with Cisplatin 0.0008 mg/ml
-0.7
-0.0
-0.6
-0.5
N.D.
stress
ALP with Thallium(I) acetate 0.002 mg/ml
-0.6
+0.1
-0.7
-0.5
N.D.
stress
ALP with Zinc 2 mM
-0.6
-0.1
-0.2
-0.7
N.D.
stress
ALP with nitrite 0.15 mM
-0.9
+0.1
-0.2
-0.6
N.D.
stress
ALP with Thallium(I) acetate 0.004 mg/ml
-0.8
+0.1
-0.6
-0.3
N.D.
stress
ALP with perchlorate 6 mM
-0.6
+0.1
-0.4
-0.7
N.D.
stress
ALP with nitrate 75 mM
-0.7
+0.3
-0.4
-0.9
N.D.
carbon source
D-Lactate (C)
-0.3
+0.2
-0.2
-1.3
N.D.
stress
ALP with nitrate 50 mM
-0.7
+0.1
-0.3
-0.7
N.D.
stress
ALP with Fusidic 0.02 mg/ml
-0.5
+0.1
-0.8
-0.5
N.D.
alp richb
ALP
-1.0
+0.1
-0.1
-0.6
N.D.
carbon source
pyruvate (C)
-0.6
+0.1
-0.4
-0.7
N.D.
stress
ALP with Cobalt chloride 0.2 mM
-0.6
+0.3
-0.4
-0.7
N.D.
stress
ALP with sodium fluoride 40 mM
-0.6
+0.2
-0.3
-0.7
N.D.
stress
ALP with Zinc 1 mM
-0.2
+0.2
-0.7
-0.7
N.D.
stress
rich media with sodium chlorite 0.16 mM
-1.1
+0.2
-0.2
-0.3
N.D.
stress
ALP with Thallium(I) acetate 0.003 mg/ml
-0.1
+0.2
-0.5
-1.0
N.D.
stress
ALP with Dimethyl Sulfoxide 2 vol%
-0.5
+0.3
-0.2
-0.9
N.D.
stress
ALP with Nickel (II) chloride 2.5 mM
-0.4
+0.5
+0.0
-1.4
N.D.
carbon source
defined media with 30 mM sodium lactate
-1.4
+0.3
-0.3
+0.4
N.D.
carbon source
defined media with 40 mM sodium acetate
+0.7
+0.4
+0.2
-0.4
N.D.
alp rich
rich media
+0.7
+0.5
+0.4
+0.3
N.D.
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