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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_0152 and Dsui_0153 are separated by 80 nucleotides
Dsui_0153 and Dsui_0154 are separated by 92 nucleotides
Dsui_0154 and Dsui_0155 overlap by 4 nucleotides
Dsui_0155 and Dsui_0156 are separated by 171 nucleotides
Dsui_0152: Dsui_0152 - PAS domain S-box, at 158,033 to 160,069
_0152
Dsui_0153: Dsui_0153 - cupin domain-containing protein, at 160,150 to 160,503
_0153
Dsui_0154: Dsui_0154 - hypothetical protein, at 160,596 to 161,237
_0154
Dsui_0155: Dsui_0155 - RNA polymerase sigma factor, sigma-70 family, at 161,234 to 161,806
_0155
Dsui_0156: Dsui_0156 - thiosulfate reductase cytochrome B subunit (membrane anchoring protein), at 161,978 to 162,574
_0156
Group
Condition
Dsui
_0152
Dsui
_0153
Dsui
_0154
Dsui
_0155
Dsui
_0156
No stressor control+ 10 mM ClO4 and 20 mM lactate
-8.6
-2.1
-0.2
-3.1
-0.4
No stressor control+ 10 mM ClO4 and 20 mM lactate
-8.4
-2.1
-0.2
-3.1
-0.4
No stressor control+ 10 mM ClO4 and 20 mM lactate
-8.2
-1.9
-0.1
-3.0
-0.4
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-8.1
-2.0
+0.2
-2.8
-0.4
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-8.1
-1.7
+0.1
-3.0
-0.2
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-8.2
-1.1
-0.1
-3.1
-0.1
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-6.8
-2.1
+0.0
-3.2
-0.6
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-7.9
-0.8
-0.0
-3.5
-0.2
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-6.3
-1.8
+0.3
-3.0
-0.4
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-7.1
-1.1
+0.4
-2.5
-0.0
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-6.3
-1.3
+0.8
-2.4
+0.1
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-4.1
-0.9
-0.4
-2.3
-1.2
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-4.1
-0.9
-0.3
-2.3
-1.2
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-4.1
-0.9
-0.3
-2.3
-1.0
anaerobic
Anaero. lactate (C), chlorate electron acceptor
-4.0
-0.7
-0.1
-2.2
-1.1
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-3.7
-1.2
+0.0
-2.2
-0.3
anaerobic
anaerobic no nitrogen ALP with 3 all (C)s and 5mM perchlorate
-3.1
-0.5
-0.4
-1.6
-0.8
anaerobic
anaerobic ALP with 3 all (C)s and 5mM perchlorate
-3.5
-0.6
-0.5
-1.5
+0.0
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-3.3
-0.6
+0.1
-0.7
-0.2
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-3.2
-0.5
+0.1
-0.7
-0.2
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-3.2
-0.5
+0.1
-0.7
-0.1
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-3.2
-0.5
+0.1
-0.7
-0.1
T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
-2.6
-0.4
+0.7
-1.7
+0.4
stress
rich media with sodium chlorite 0.16 mM
-0.2
-1.6
-0.1
-0.5
-0.5
stress
ALP with perchlorate 6 mM
-0.3
+0.1
+0.2
+0.0
-1.7
stress
ALP with Thallium(I) acetate 0.004 mg/ml
+0.4
+0.4
+0.2
+0.3
-1.1
stress
ALP with Bacitracin 0.2 mg/ml
+0.6
+0.6
+0.6
+0.5
-1.4
stress
ALP with Fusidic 0.01 mg/ml
+0.2
+0.2
+1.7
+0.2
-1.3
stress
ALP with Fusidic 0.007 mg/ml
+0.3
+0.3
+1.6
+0.2
-1.3
stress
ALP with Fusidic 0.02 mg/ml
+0.3
+0.2
+1.7
+0.3
-1.2
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