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Cofit
Protein
Homologs
Fitness for 5 genes in
Dechlorosoma suillum PS
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Number of genes on each side:
1
2
3
4
5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Dsui_0059 and Dsui_0060 are separated by 3 nucleotides
Dsui_0060 and Dsui_0061 overlap by 4 nucleotides
Dsui_0061 and Dsui_0062 are separated by 42 nucleotides
Dsui_0062 and Dsui_0063 overlap by 8 nucleotides
Dsui_0059: Dsui_0059 - glycosyl transferase, at 56,370 to 57,104
_0059
Dsui_0060: Dsui_0060 - GDP-D-mannose dehydratase, at 57,108 to 58,082
_0060
Dsui_0061: Dsui_0061 - glycosyltransferase, at 58,079 to 59,182
_0061
Dsui_0062: Dsui_0062 - hypothetical protein, at 59,225 to 59,581
_0062
Dsui_0063: Dsui_0063 - hypothetical protein, at 59,574 to 60,317
_0063
Group
Condition
Dsui
_0059
Dsui
_0060
Dsui
_0061
Dsui
_0062
Dsui
_0063
stress
ALP with Thallium(I) acetate 0.002 mg/ml
-4.2
-2.4
-4.6
+0.3
+0.3
stress
ALP with Thallium(I) acetate 0.003 mg/ml
-3.6
-2.5
-4.6
+0.4
+0.2
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-3.0
-3.0
-3.2
+0.1
-0.1
stress
ALP with Thallium(I) acetate 0.004 mg/ml
-3.9
-1.6
-4.1
+0.4
+0.3
stress
ALP with Fusidic 0.01 mg/ml
-3.0
-2.7
-3.0
+0.4
+0.1
stress
ALP with Fusidic 0.007 mg/ml
-3.0
-2.7
-3.0
+0.4
+0.2
stress
ALP with Fusidic 0.02 mg/ml
-3.0
-2.6
-3.0
+0.4
+0.1
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.7
-2.0
-1.7
+0.1
-0.1
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-2.1
-1.7
-1.7
+0.2
+0.1
spiked with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.6
-2.3
-1.7
+0.3
+0.2
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.4
-1.7
-1.4
+0.2
+0.1
ALP with 3 all (C)s
-1.3
-1.2
-1.0
-0.0
-0.0
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-1.5
-1.0
-1.2
-0.0
+0.2
with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
-1.1
-1.5
-1.5
+0.5
+0.5
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-1.3
-1.0
-1.1
+0.1
+0.2
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-1.1
-1.0
-1.1
+0.1
+0.2
anaerobic
Anaero. lactate (C), perchlorate electron acceptor
-1.2
-1.0
-1.1
+0.2
+0.2
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-1.0
-1.2
-0.9
+0.1
+0.1
incubated with with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate for 3 hours
-0.9
-1.2
-1.0
+0.2
+0.1
stress
ALP with Bacitracin 0.2 mg/ml
-1.3
-0.8
-0.8
+0.5
+0.5
carbon source
L-Lactate (C)
+0.6
+0.9
+0.9
+0.2
+0.2
carbon source
D,L-Lactate (C)
+0.6
+0.9
+0.9
+0.1
+0.2
carbon source
propionate (C)
+0.7
+0.9
+1.1
+0.0
+0.1
carbon source
propionate (C)
+1.0
+1.2
+1.3
+0.1
+0.0
stress
ALP with Nickel (II) chloride 2.5 mM
+1.1
+1.1
+1.4
+0.5
+0.6
carbon source
a-Ketoglutaric (C)
+1.3
+1.5
+1.7
+0.0
+0.1
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+1.8
+1.4
+1.5
+0.0
-0.1
carbon source
a-Ketoglutaric (C)
+1.2
+1.4
+1.7
+0.2
+0.2
anaerobic
Anaerobic, acetate donor; nitrate electron acceptor
+2.0
+1.5
+1.7
+0.1
+0.0
stress
ALP with copper (II) chloride 0.6 mM
+2.6
+2.6
+2.8
-0.2
+0.1
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