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Fitness for 5 genes in
Vibrio cholerae E7946 ATCC 55056
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
CSW01_12895 and CSW01_12900 are separated by 10 nucleotides
CSW01_12900 and CSW01_12905 overlap by 4 nucleotides
CSW01_12905 and CSW01_12910 are separated by 145 nucleotides
CSW01_12910 and CSW01_12915 are separated by 81 nucleotides
CSW01_12895: CSW01_12895 - gamma-glutamylcyclotransferase, at 2,758,091 to 2,758,438
_12895
CSW01_12900: CSW01_12900 - DUF490 domain-containing protein, at 2,758,449 to 2,762,213
_12900
CSW01_12905: CSW01_12905 - outer membrane protein assembly factor, at 2,762,210 to 2,763,958
_12905
CSW01_12910: CSW01_12910 - peptide-methionine (S)-S-oxide reductase, at 2,764,104 to 2,764,742
_12910
CSW01_12915: CSW01_12915 - YtfJ family protein, at 2,764,824 to 2,765,375
_12915
Group
Condition
CSW01
_12895
CSW01
_12900
CSW01
_12905
CSW01
_12910
CSW01
_12915
phage
ICP1_phage_0.23_MOI_rep1
-0.5
-0.1
-0.2
-0.4
+0.0
phage
ICP3_phage_0.41_MOI_rep2
-0.4
-0.1
-0.2
-0.2
-0.1
phage
ICP3_phage_0.41_MOI_rep1
-0.2
-0.2
-0.1
+0.0
-0.3
phage
ICP3_phage_4.1_MOI_rep1
-0.1
-0.1
+0.1
-0.2
-0.4
phage
ICP3_phage_41.1_MOI_rep1
-0.5
-0.1
+0.0
-0.2
+0.3
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_18HR_ZN21A
-0.2
-0.2
-0.2
+0.0
-0.0
phage
ICP3_phage_411_MOI_rep2
-0.8
+0.1
+0.0
-0.2
+0.5
phage
ICP1_phage_0.23_MOI_rep2
-0.1
+0.0
-0.2
-0.2
+0.1
lb_aerobic
LB_Aerobic_180MIN_ZN14A
-0.2
-0.1
+0.0
+0.0
-0.1
lb_anaerobic
LB_Anaerobic_120MIN_ZN12B
-0.5
+0.0
+0.0
+0.2
-0.0
phage
ICP1_phage_2.3_MOI_rep2
-0.1
-0.1
+0.1
-0.1
-0.1
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
-0.3
-0.2
+0.0
+0.2
+0.0
lb_aerobic
LB_Aerobic_180MIN_ZN14B
-0.3
-0.0
-0.0
-0.1
+0.1
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_120MIN_ZN11B
-0.2
-0.0
-0.1
+0.1
+0.1
phage
ICP3_phage_4.1_MOI_rep2
-0.4
-0.1
+0.1
-0.0
+0.3
phage
ICP1_phage_23.5_MOI_rep2
+0.2
-0.1
+0.1
-0.2
-0.1
lb_anaerobic
LB_Anaerobic_180MIN_ZN16B
-0.4
-0.0
+0.0
+0.2
+0.2
lb_aerobic
LB_Aerobic_120MIN_ZN10B
-0.2
-0.0
-0.0
+0.2
+0.0
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
-0.3
-0.1
-0.0
+0.3
+0.1
lb_anaerobic
LB_Anaerobic_120MIN_ZN12A
-0.1
-0.0
+0.1
+0.3
-0.1
phage
ICP3_phage_41.1_MOI_rep2
+0.2
-0.1
+0.0
-0.1
+0.1
phage
ICP1_phage_235.3_MOI_rep2
-0.2
-0.0
-0.2
+0.2
+0.4
phage
ICP1_phage_235.3_MOI_rep1
+0.1
-0.0
-0.0
-0.2
+0.3
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
-0.1
-0.0
-0.0
+0.2
+0.2
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_18HR_ZN19A
-0.2
+0.1
+0.1
+0.2
+0.1
lb_aerobic
LB_Aerobic_18HR_ZN18A
-0.1
+0.0
-0.0
+0.1
+0.2
lb_anaerobic
LB_Anaerobic_60MIN_ZN4B
-0.1
-0.0
+0.0
+0.2
+0.3
lb_aerobic
LB_Aerobic_18HR_ZN18B
+0.0
+0.1
-0.0
+0.2
+0.2
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_120MIN_ZN11A
+0.0
+0.1
+0.1
+0.2
+0.1
lb_anaerobic
LB_Anaerobic_18HR_ZN20A
+0.1
+0.0
+0.2
+0.2
+0.2
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