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Fitness for 5 genes in
Vibrio cholerae E7946 ATCC 55056
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
CSW01_12850 and CSW01_12855 are separated by 102 nucleotides
CSW01_12855 and CSW01_12860 overlap by 7 nucleotides
CSW01_12860 and CSW01_12865 are separated by 9 nucleotides
CSW01_12865 and CSW01_12870 are separated by 261 nucleotides
CSW01_12850: CSW01_12850 - DUF615 family protein, at 2,749,750 to 2,750,331
_12850
CSW01_12855: CSW01_12855 - thiamine ABC transporter ATP-binding protein, at 2,750,434 to 2,751,168
_12855
CSW01_12860: CSW01_12860 - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 2,751,162 to 2,752,754
_12860
CSW01_12865: CSW01_12865 - thiamine ABC transporter substrate binding subunit, at 2,752,764 to 2,753,756
_12865
CSW01_12870: CSW01_12870 - aromatic acid decarboxylase, at 2,754,018 to 2,754,653
_12870
Group
Condition
CSW01
_12850
CSW01
_12855
CSW01
_12860
CSW01
_12865
CSW01
_12870
phage
ICP1_phage_23.5_MOI_rep2
+0.0
-1.0
-0.2
-0.3
N.D.
phage
ICP3_phage_411_MOI_rep2
-0.1
-0.7
-0.1
-0.4
N.D.
phage
ICP1_phage_2.3_MOI_rep2
+0.1
-0.7
-0.3
-0.2
N.D.
phage
ICP3_phage_411_MOI_rep1
-0.0
-0.3
-0.5
-0.4
N.D.
phage
ICP3_phage_0.41_MOI_rep2
+0.1
-0.8
-0.1
-0.3
N.D.
phage
ICP1_phage_235.3_MOI_rep1
+0.0
-0.6
-0.3
-0.3
N.D.
phage
ICP3_phage_41.1_MOI_rep1
-0.3
-0.1
-0.2
-0.4
N.D.
phage
ICP3_phage_4.1_MOI_rep1
+0.1
-0.6
-0.1
-0.3
N.D.
phage
ICP1_phage_0.23_MOI_rep1
-0.2
-0.0
-0.3
-0.2
N.D.
phage
ICP1_phage_23.5_MOI_rep1
-0.1
-0.2
+0.0
-0.4
N.D.
lb_aerobic_phage
LB_Aerobic_PHAGE INFX20MPI_ZN6A
-0.3
-0.1
-0.1
-0.1
N.D.
phage
ICP1_phage_2.3_MOI_rep1
+0.0
-0.1
-0.1
-0.3
N.D.
phage
NoPhageControl
-0.1
-0.2
-0.2
-0.1
N.D.
phage
ICP1_phage_235.3_MOI_rep2
+0.3
-0.2
-0.3
-0.2
N.D.
lb_anaerobic
LB_Anaerobic_18HR_ZN20A
-0.1
-0.2
+0.0
-0.1
N.D.
lb_anaerobic
LB_Anaerobic_60MIN_ZN4B
+0.1
-0.2
-0.1
-0.2
N.D.
lb_anaerobic
LB_Anaerobic_18HR_ZN20B
-0.1
-0.2
+0.0
-0.0
N.D.
lb_anaerobic
LB_Anaerobic_120MIN_ZN12B
-0.2
-0.2
-0.0
+0.0
N.D.
lb_anaerobic
LB_Anaerobic_180MIN_ZN16A
-0.0
-0.2
-0.1
-0.1
N.D.
phage
ICP3_phage_4.1_MOI_rep2
+0.3
-0.3
-0.3
-0.0
N.D.
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
+0.1
-0.1
-0.0
-0.1
N.D.
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_18HR_ZN19B
+0.1
-0.2
-0.0
-0.1
N.D.
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_18HR_ZN19A
-0.2
-0.0
-0.0
+0.1
N.D.
lb_aerobic
LB_Aerobic_18HR_ZN18A
-0.1
-0.2
-0.0
+0.1
N.D.
lb_aerobic
LB_Aerobic_120MIN_ZN10B
+0.0
-0.2
+0.0
+0.1
N.D.
phage
ICP3_phage_0.41_MOI_rep1
+0.3
-0.1
-0.4
+0.1
N.D.
lb_aerobic
LB_Aerobic_180MIN_ZN14B
+0.2
-0.3
-0.0
+0.1
N.D.
phage
ICP3_phage_41.1_MOI_rep2
+0.1
-0.1
-0.2
+0.4
N.D.
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
+0.1
-0.1
-0.1
+0.3
N.D.
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
+0.1
+0.2
+0.1
+0.2
N.D.
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