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Fitness for 5 genes in
Vibrio cholerae E7946 ATCC 55056
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
CSW01_11870 and CSW01_11875 are separated by 130 nucleotides
CSW01_11875 and CSW01_11880 overlap by 38 nucleotides
CSW01_11880 and CSW01_11885 are separated by 53 nucleotides
CSW01_11885 and CSW01_11890 are separated by 96 nucleotides
CSW01_11870: CSW01_11870 - DNA repair protein RadA, at 2,529,152 to 2,530,528
_11870
CSW01_11875: CSW01_11875 - PilZ domain-containing protein, at 2,530,659 to 2,532,998
_11875
CSW01_11880: CSW01_11880 - hypothetical protein, at 2,532,961 to 2,533,149
_11880
CSW01_11885: CSW01_11885 - phosphoserine phosphatase SerB, at 2,533,203 to 2,534,189
_11885
CSW01_11890: CSW01_11890 - SMP protein, at 2,534,286 to 2,534,909
_11890
Group
Condition
CSW01
_11870
CSW01
_11875
CSW01
_11880
CSW01
_11885
CSW01
_11890
phage
ICP3_phage_411_MOI_rep1
+0.2
+0.1
-2.8
+0.0
+0.2
phage
ICP1_phage_2.3_MOI_rep2
-0.0
-0.0
-2.0
+0.1
+0.3
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_18HR_ZN19B
-0.8
-0.1
-0.3
+0.0
+0.1
lb_aerobic
LB_Aerobic_18HR_ZN18A
-0.6
-0.1
-0.1
+0.1
-0.1
phage
ICP3_phage_41.1_MOI_rep1
-0.1
+0.0
-0.9
+0.2
+0.1
lb_anaerobic
LB_Anaerobic_18HR_ZN20A
-0.9
-0.0
+0.1
+0.0
+0.1
phage
ICP1_phage_23.5_MOI_rep1
+0.2
-0.1
-0.6
+0.1
-0.0
lb_anaerobic
LB_Anaerobic_180MIN_ZN16A
-0.3
+0.0
-0.3
+0.0
+0.2
phage
ICP3_phage_0.41_MOI_rep1
+0.0
+0.0
-0.5
-0.1
+0.1
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
-0.0
-0.1
-0.4
+0.1
+0.0
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_18HR_ZN19A
-0.2
-0.1
+0.1
-0.1
+0.1
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
-0.4
-0.1
+0.1
+0.2
-0.0
phage
ICP3_phage_0.41_MOI_rep2
+0.4
+0.0
-1.1
+0.2
+0.2
phage
ICP3_phage_4.1_MOI_rep1
+0.3
-0.1
-0.6
+0.1
+0.2
lb_aerobic
LB_Aerobic_180MIN_ZN14B
-0.4
-0.1
+0.1
-0.0
+0.1
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
-0.5
-0.1
+0.4
+0.1
-0.0
lb_aerobic
LB_Aerobic_60MIN_ZN2B
-0.1
+0.1
-0.5
+0.2
+0.2
phage
ICP3_phage_411_MOI_rep2
+0.5
-0.1
-0.4
-0.2
+0.0
phage
ICP3_phage_4.1_MOI_rep2
-0.0
+0.0
-0.5
+0.2
+0.3
lb_aerobic
LB_Aerobic_18HR_ZN18B
-0.2
-0.2
+0.4
-0.1
+0.2
phage
ICP1_phage_0.23_MOI_rep2
+0.3
+0.1
-0.1
+0.1
-0.1
phage
ICP1_phage_0.23_MOI_rep1
+0.1
+0.1
-0.2
+0.2
+0.1
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_180MIN_ZN15A
-0.2
+0.1
+0.2
+0.1
+0.2
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
-0.2
-0.1
+0.6
+0.1
+0.0
lb_aerobic_phage
LB_Aerobic_PHAGE INFX20MPI_ZN6A
-0.2
-0.0
+0.2
+0.1
+0.4
lb_anaerobic
LB_Anaerobic_120MIN_ZN12A
-0.3
-0.0
+0.6
+0.2
+0.0
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
-0.1
+0.0
+0.7
+0.0
+0.1
phage
ICP1_phage_235.3_MOI_rep2
+0.3
+0.3
+0.2
-0.1
+0.1
phage
ICP1_phage_23.5_MOI_rep2
+0.0
+0.1
+0.8
-0.0
+0.1
phage
ICP1_phage_2.3_MOI_rep1
+0.1
+0.0
+0.3
+0.4
+0.3
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