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Protein
Homologs
Fitness for 5 genes in
Vibrio cholerae E7946 ATCC 55056
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
CSW01_08405 and CSW01_08410 are separated by 86 nucleotides
CSW01_08410 and CSW01_08415 overlap by 23 nucleotides
CSW01_08415 and CSW01_08420 overlap by 29 nucleotides
CSW01_08420 and CSW01_08425 are separated by 171 nucleotides
CSW01_08405: CSW01_08405 - DNA-3-methyladenine glycosylase I, at 1,803,897 to 1,804,478
_08405
CSW01_08410: CSW01_08410 - AcrB/AcrD/AcrF family protein, at 1,804,565 to 1,807,678
_08410
CSW01_08415: CSW01_08415 - efflux RND transporter periplasmic adaptor subunit, at 1,807,656 to 1,808,765
_08415
CSW01_08420: CSW01_08420 - efflux RND transporter periplasmic adaptor subunit, at 1,808,737 to 1,809,768
_08420
CSW01_08425: CSW01_08425 - envelope stress response membrane protein PspC, at 1,809,940 to 1,810,356
_08425
Group
Condition
CSW01
_08405
CSW01
_08410
CSW01
_08415
CSW01
_08420
CSW01
_08425
phage
ICP1_phage_2.3_MOI_rep1
-0.1
-0.1
-0.5
-0.7
-0.2
phage
ICP3_phage_41.1_MOI_rep2
-0.1
+0.1
-0.3
-0.4
-0.6
phage
ICP1_phage_235.3_MOI_rep2
-0.0
-0.1
-0.1
-0.4
-0.5
phage
ICP3_phage_4.1_MOI_rep1
-0.2
-0.0
+0.1
-0.2
-0.9
phage
ICP3_phage_41.1_MOI_rep1
-0.2
+0.1
+0.3
-0.2
-0.8
phage
ICP1_phage_0.23_MOI_rep2
-0.1
+0.1
+0.2
-0.5
-0.5
lb_anaerobic
LB_Anaerobic_60MIN_ZN4B
+0.0
-0.1
-0.0
-0.0
-0.7
phage
ICP3_phage_411_MOI_rep1
-0.1
-0.2
-0.2
-0.2
-0.1
phage
ICP1_phage_235.3_MOI_rep1
+0.2
+0.2
-0.2
-0.3
-0.5
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_180MIN_ZN15B
-0.1
-0.1
-0.1
-0.3
-0.1
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_18HR_ZN21A
+0.1
-0.1
-0.0
-0.2
-0.4
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
-0.1
-0.1
-0.0
+0.0
-0.4
phage
ICP1_phage_0.23_MOI_rep1
-0.3
+0.1
+0.3
-0.0
-0.5
phage
ICP3_phage_411_MOI_rep2
+0.0
-0.1
+0.1
-0.5
-0.1
phage
ICP3_phage_0.41_MOI_rep1
-0.1
-0.0
+0.1
-0.2
-0.2
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
-0.2
-0.1
-0.1
+0.0
-0.1
lb_aerobic
LB_Aerobic_180MIN_ZN14B
+0.1
-0.0
+0.0
-0.1
-0.3
phage
ICP1_phage_23.5_MOI_rep1
+0.2
+0.2
-0.1
+0.1
-0.7
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_120MIN_ZN11A
-0.0
-0.1
-0.2
+0.1
-0.2
lb_anaerobic
LB_Anaerobic_120MIN_ZN12A
+0.1
-0.0
-0.1
-0.1
-0.2
lb_aerobic
LB_Aerobic_60MIN_ZN2B
+0.1
-0.1
-0.1
+0.0
-0.3
phage
ICP3_phage_4.1_MOI_rep2
-0.0
-0.0
+0.1
+0.0
-0.4
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
+0.1
-0.1
-0.0
-0.1
-0.2
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
+0.1
-0.1
+0.1
+0.0
-0.5
lb_anaerobic
LB_Anaerobic_18HR_ZN20B
+0.1
-0.1
-0.1
-0.1
-0.1
phage
ICP1_phage_23.5_MOI_rep2
+0.2
+0.1
+0.1
-0.1
-0.5
phage
ICP3_phage_0.41_MOI_rep2
-0.0
+0.2
+0.2
-0.3
-0.2
phage
NoPhageControl
+0.0
+0.1
-0.0
-0.3
+0.1
phage
NoPhageControl
+0.0
+0.1
+0.1
-0.2
-0.0
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_18HR_ZN19B
+0.1
+0.1
+0.1
-0.1
+0.0
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