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Fitness for 5 genes in
Vibrio cholerae E7946 ATCC 55056
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
CSW01_07920 and CSW01_07925 overlap by 17 nucleotides
CSW01_07925 and CSW01_07930 are separated by 63 nucleotides
CSW01_07930 and CSW01_07935 are separated by 79 nucleotides
CSW01_07935 and CSW01_07940 overlap by 76 nucleotides
CSW01_07920: CSW01_07920 - lipid A modification system glycine carrier protein AlmF, at 1,687,017 to 1,687,253
_07920
CSW01_07925: CSW01_07925 - lipid A modification system glycine--protein ligase AlmE, at 1,687,237 to 1,688,907
_07925
CSW01_07930: CSW01_07930 - LysR family transcriptional regulator, at 1,688,971 to 1,689,882
_07930
CSW01_07935: CSW01_07935 - NADH-quinone oxidoreductase subunit L, at 1,689,962 to 1,691,512
_07935
CSW01_07940: CSW01_07940 - DUF2309 domain-containing protein, at 1,691,437 to 1,694,025
_07940
Group
Condition
CSW01
_07920
CSW01
_07925
CSW01
_07930
CSW01
_07935
CSW01
_07940
phage
ICP3_phage_411_MOI_rep2
-1.4
+0.0
+0.2
-0.1
-0.2
lb_aerobic
LB_Aerobic_180MIN_ZN14B
-1.0
-0.2
+0.1
+0.0
+0.1
phage
ICP3_phage_411_MOI_rep1
-0.4
-0.2
-0.3
+0.0
-0.1
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_18HR_ZN19B
-0.4
-0.2
-0.2
+0.0
+0.1
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
-0.4
-0.1
-0.2
-0.1
+0.1
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_18HR_ZN21A
-0.1
-0.3
-0.3
-0.0
+0.1
lb_aerobic
LB_Aerobic_120MIN_ZN10B
-0.4
-0.2
+0.1
-0.2
+0.2
phage
ICP1_phage_2.3_MOI_rep2
+0.1
-0.2
-0.5
-0.0
+0.1
lb_anaerobic
LB_Anaerobic_18HR_ZN20A
-0.5
-0.1
-0.0
+0.0
+0.1
lb_aerobic
LB_Aerobic_18HR_ZN18B
-0.6
-0.0
+0.0
+0.1
+0.1
lb_anaerobic
LB_Anaerobic_18HR_ZN20B
-0.2
-0.1
-0.1
+0.0
+0.1
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_180MIN_ZN15A
-0.3
-0.1
-0.1
+0.1
+0.0
phage
ICP3_phage_0.41_MOI_rep2
+0.3
-0.1
-0.4
-0.3
+0.1
lb_anaerobic
LB_Anaerobic_60MIN_ZN4B
-0.3
-0.0
-0.1
+0.0
+0.2
lb_anaerobic
LB_Anaerobic_180MIN_ZN16A
-0.3
-0.0
-0.2
+0.1
+0.2
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
-0.3
+0.1
-0.0
-0.0
+0.2
phage
ICP3_phage_41.1_MOI_rep1
+0.3
-0.3
-0.0
+0.1
-0.0
lb_anaerobic
LB_Anaerobic_120MIN_ZN12B
+0.2
-0.1
+0.2
-0.1
+0.0
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
+0.2
-0.0
-0.1
+0.2
+0.1
phage
ICP3_phage_4.1_MOI_rep1
+0.6
+0.0
+0.2
-0.2
-0.3
phage
ICP1_phage_0.23_MOI_rep2
+0.7
-0.1
-0.1
-0.0
-0.1
phage
ICP1_phage_2.3_MOI_rep1
+0.6
-0.2
+0.0
+0.1
-0.0
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
+0.5
-0.1
-0.0
+0.1
+0.1
phage
NoPhageControl
+0.3
+0.0
+0.2
+0.1
-0.0
phage
ICP1_phage_23.5_MOI_rep2
+0.9
-0.0
-0.2
-0.1
+0.1
phage
ICP3_phage_4.1_MOI_rep2
+0.5
-0.1
+0.1
-0.1
+0.3
phage
ICP1_phage_235.3_MOI_rep2
+1.1
+0.0
-0.1
-0.2
+0.2
phage
ICP3_phage_0.41_MOI_rep1
+0.8
+0.2
+0.1
-0.1
+0.0
phage
ICP3_phage_41.1_MOI_rep2
+0.5
+0.2
-0.1
+0.3
+0.2
phage
ICP1_phage_23.5_MOI_rep1
+1.4
-0.1
-0.0
+0.2
-0.1
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