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Fitness for 5 genes in
Vibrio cholerae E7946 ATCC 55056
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
CSW01_05675 and CSW01_05680 overlap by 4 nucleotides
CSW01_05680 and CSW01_05685 are separated by 10 nucleotides
CSW01_05685 and CSW01_05690 overlap by 1 nucleotides
CSW01_05690 and CSW01_05695 overlap by 68 nucleotides
CSW01_05675: CSW01_05675 - nuclear transport factor 2 family protein, at 1,185,972 to 1,186,400
_05675
CSW01_05680: CSW01_05680 - short-chain dehydrogenase, at 1,186,397 to 1,187,122
_05680
CSW01_05685: CSW01_05685 - FAD-dependent oxidoreductase, at 1,187,133 to 1,188,413
_05685
CSW01_05690: CSW01_05690 - DUF1365 domain-containing protein, at 1,188,413 to 1,189,222
_05690
CSW01_05695: CSW01_05695 - class I SAM-dependent methyltransferase, at 1,189,155 to 1,190,453
_05695
Group
Condition
CSW01
_05675
CSW01
_05680
CSW01
_05685
CSW01
_05690
CSW01
_05695
phage
ICP1_phage_0.23_MOI_rep2
-0.3
-0.1
+0.4
-0.7
-0.1
lb_anaerobic
LB_Anaerobic_60MIN_ZN4B
-0.6
-0.2
-0.0
-0.1
+0.1
phage
ICP3_phage_4.1_MOI_rep1
-0.0
-0.4
-0.1
-0.2
-0.1
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
+0.0
-0.1
-0.1
-0.4
-0.1
phage
ICP3_phage_4.1_MOI_rep2
+0.1
-0.0
-0.2
-0.1
-0.3
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
+0.3
-0.1
-0.3
-0.2
+0.0
phage
ICP1_phage_0.23_MOI_rep1
+0.2
-0.1
-0.4
-0.1
+0.2
phage
NoPhageControl
-0.3
+0.0
+0.2
-0.1
-0.1
lb_anaerobic
LB_Anaerobic_18HR_ZN20B
+0.3
-0.2
-0.1
-0.1
-0.1
phage
ICP1_phage_23.5_MOI_rep1
-0.1
+0.2
-0.2
+0.0
-0.0
phage
ICP1_phage_235.3_MOI_rep1
-0.1
-0.0
+0.1
+0.2
-0.1
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
-0.0
+0.1
-0.3
+0.3
-0.0
phage
ICP1_phage_23.5_MOI_rep2
-0.0
-0.0
-0.2
+0.4
-0.0
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_120MIN_ZN11B
+0.1
+0.0
-0.1
+0.2
-0.1
lb_aerobic
LB_Aerobic_180MIN_ZN14A
+0.3
-0.1
-0.0
+0.1
-0.1
phage
ICP1_phage_235.3_MOI_rep2
+0.5
-0.3
+0.2
+0.2
-0.4
lb_anaerobic
LB_Anaerobic_120MIN_ZN12A
+0.3
+0.0
+0.1
+0.1
-0.3
phage
ICP3_phage_0.41_MOI_rep1
+0.3
-0.1
+0.4
-0.2
-0.1
lb_aerobic
LB_Aerobic_60MIN_ZN2B
+0.3
-0.0
+0.0
+0.2
-0.0
lb_aerobic
LB_Aerobic_120MIN_ZN10B
+0.2
+0.0
-0.1
+0.2
+0.0
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
+0.2
-0.1
+0.0
+0.0
+0.2
phage
ICP1_phage_2.3_MOI_rep1
+0.0
+0.1
-0.1
+0.5
-0.1
phage
ICP3_phage_41.1_MOI_rep2
+0.3
-0.2
+0.1
+0.2
+0.1
lb_aerobic
LB_Aerobic_180MIN_ZN14B
+0.4
+0.1
+0.0
-0.0
+0.2
lb_anaerobic
LB_Anaerobic_18HR_ZN20A
+0.4
-0.0
+0.1
+0.0
+0.0
lb_anaerobic
LB_Anaerobic_180MIN_ZN16A
+0.5
-0.0
-0.2
+0.2
+0.1
lb_anaerobic
LB_Anaerobic_180MIN_ZN16B
+0.3
+0.1
-0.0
+0.1
+0.2
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_180MIN_ZN15A
+0.4
-0.0
+0.0
+0.1
+0.3
phage
ICP3_phage_411_MOI_rep1
+0.3
+0.0
+0.4
+0.4
-0.3
phage
ICP3_phage_0.41_MOI_rep2
+0.1
+0.1
+0.6
-0.0
+0.0
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