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Fitness for 5 genes in
Vibrio cholerae E7946 ATCC 55056
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
CSW01_05330 and CSW01_05335 are separated by 125 nucleotides
CSW01_05335 and CSW01_05340 are separated by 78 nucleotides
CSW01_05340 and CSW01_05345 are separated by 208 nucleotides
CSW01_05345 and CSW01_05350 are separated by 169 nucleotides
CSW01_05330: CSW01_05330 - fatty acid oxidation complex subunit alpha FadJ, at 1,114,943 to 1,117,069
_05330
CSW01_05335: CSW01_05335 - NAD(P)H nitroreductase, at 1,117,195 to 1,117,743
_05335
CSW01_05340: CSW01_05340 - LysR family transcriptional regulator, at 1,117,822 to 1,118,721
_05340
CSW01_05345: CSW01_05345 - two-component system response regulator, at 1,118,930 to 1,120,036
_05345
CSW01_05350: CSW01_05350 - hypothetical protein, at 1,120,206 to 1,120,337
_05350
Group
Condition
CSW01
_05330
CSW01
_05335
CSW01
_05340
CSW01
_05345
CSW01
_05350
lb_aerobic
LB_Aerobic_18HR_ZN18A
-0.1
-0.3
-1.3
-0.2
-0.4
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
+0.1
-0.1
-1.6
-0.1
+0.2
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_18HR_ZN21A
-0.1
-0.1
-0.8
+0.3
-0.5
lb_anaerobic
LB_Anaerobic_18HR_ZN20B
-0.0
-0.3
-0.7
+0.0
-0.0
lb_aerobic_phage
LB_Aerobic_PHAGE INFX20MPI_ZN6A
-0.1
-0.2
-0.3
-0.0
-0.3
phage
ICP3_phage_0.41_MOI_rep2
-0.1
-0.3
-0.2
-0.0
-0.1
phage
ICP1_phage_2.3_MOI_rep1
+0.2
-0.2
-0.4
-0.4
+0.1
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
-0.2
-0.2
-0.1
+0.1
-0.3
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_180MIN_ZN17A
+0.1
-0.2
-0.3
-0.1
-0.1
phage
ICP1_phage_235.3_MOI_rep2
+0.1
+0.1
-0.1
-0.4
-0.3
lb_aerobic
LB_Aerobic_18HR_ZN18B
-0.1
-0.2
+0.0
+0.1
-0.3
lb_anaerobic
LB_Anaerobic_60MIN_ZN4B
-0.2
-0.2
-0.3
+0.2
+0.1
phage
ICP3_phage_4.1_MOI_rep2
-0.0
-0.4
+0.1
+0.0
-0.2
lb_anaerobic
LB_Anaerobic_120MIN_ZN12B
-0.1
-0.4
-0.1
+0.2
+0.1
phage
ICP3_phage_0.41_MOI_rep1
+0.2
-0.2
-0.2
-0.1
-0.1
phage
ICP3_phage_411_MOI_rep1
+0.2
+0.1
+0.1
-0.5
-0.1
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_180MIN_ZN15A
+0.0
-0.3
+0.0
+0.3
-0.3
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
+0.1
-0.1
+0.1
+0.5
-0.7
phage
ICP1_phage_0.23_MOI_rep1
+0.2
-0.1
+0.3
+0.3
-0.8
phage
ICP3_phage_4.1_MOI_rep1
+0.0
-0.2
+0.3
-0.1
-0.1
phage
ICP1_phage_23.5_MOI_rep1
+0.1
+0.1
+0.0
+0.1
-0.5
lb_anaerobic
LB_Anaerobic_120MIN_ZN12A
-0.1
-0.1
+0.1
+0.2
-0.2
phage
ICP3_phage_411_MOI_rep2
+0.0
-0.0
+0.3
-0.0
-0.3
phage
ICP1_phage_2.3_MOI_rep2
+0.2
+0.2
-0.3
+0.1
-0.2
phage
ICP3_phage_41.1_MOI_rep1
+0.3
-0.2
+0.0
-0.3
+0.2
phage
ICP3_phage_41.1_MOI_rep2
+0.3
-0.2
+0.2
-0.1
-0.1
phage
ICP1_phage_0.23_MOI_rep2
+0.0
+0.2
-0.1
+0.2
-0.3
phage
ICP1_phage_235.3_MOI_rep1
+0.2
-0.2
+0.0
+0.3
-0.2
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
-0.0
-0.1
-0.1
+0.1
+0.4
lb_aerobic
LB_Aerobic_60MIN_ZN2B
-0.1
-0.0
+0.0
+0.2
+0.5
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