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Cofit
Fitness for 5 genes in
Vibrio cholerae E7946 ATCC 55056
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
CSW01_04210 and CSW01_04215 are separated by 301 nucleotides
CSW01_04215 and CSW01_04220 are separated by 25 nucleotides
CSW01_04220 and CSW01_04225 are separated by 341 nucleotides
CSW01_04225 and CSW01_04230 are separated by 261 nucleotides
CSW01_04210: CSW01_04210 - hypothetical protein, at 871,502 to 871,684
_04210
CSW01_04215: CSW01_04215 - IS481 family transposase ISVch1, at 871,986 to 872,963
_04215
CSW01_04220: CSW01_04220 - hypothetical protein, at 872,989 to 873,669
_04220
CSW01_04225: CSW01_04225 - aldehyde dehydrogenase, at 874,011 to 875,450
_04225
CSW01_04230: CSW01_04230 - peptidase M66, at 875,712 to 878,753
_04230
Group
Condition
CSW01
_04210
CSW01
_04215
CSW01
_04220
CSW01
_04225
CSW01
_04230
phage
ICP3_phage_0.41_MOI_rep2
-1.0
-0.3
-0.1
-0.3
-0.3
phage
ICP1_phage_235.3_MOI_rep2
-0.8
-0.4
-0.2
-0.3
-0.3
phage
ICP1_phage_2.3_MOI_rep1
-0.4
-0.8
-0.1
-0.1
-0.2
phage
ICP1_phage_0.23_MOI_rep2
-0.8
-0.3
-0.1
-0.1
-0.2
phage
ICP1_phage_0.23_MOI_rep1
-0.1
-0.8
-0.1
-0.1
-0.1
phage
ICP3_phage_411_MOI_rep2
-0.7
+0.0
+0.1
-0.3
-0.3
phage
ICP1_phage_23.5_MOI_rep1
-0.5
-0.1
-0.1
-0.2
-0.3
phage
ICP3_phage_41.1_MOI_rep2
-0.3
-0.3
-0.1
-0.2
-0.3
phage
ICP3_phage_41.1_MOI_rep1
-0.4
-0.1
+0.1
-0.3
-0.4
phage
ICP3_phage_4.1_MOI_rep2
+0.0
-0.3
-0.2
-0.2
-0.3
phage
ICP3_phage_4.1_MOI_rep1
-0.1
-0.3
+0.2
-0.3
-0.4
phage
ICP1_phage_23.5_MOI_rep2
-0.0
-0.2
-0.3
-0.2
-0.2
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_18HR_ZN19B
+0.1
-0.2
-0.2
-0.2
-0.3
phage
ICP1_phage_235.3_MOI_rep1
+0.0
-0.3
-0.1
-0.1
-0.3
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_120MIN_ZN11B
+0.1
-0.1
-0.2
-0.2
-0.3
lb_aerobic_phage
LB_Aerobic_PHAGE INFX20MPI_ZN6A
+0.0
-0.1
-0.1
-0.2
-0.2
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_18HR_ZN21A
-0.0
-0.2
-0.2
-0.1
-0.1
lb_anaerobic
LB_Anaerobic_18HR_ZN20A
-0.0
-0.2
-0.1
-0.1
-0.1
phage
NoPhageControl
-0.3
-0.0
+0.1
-0.2
-0.2
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_18HR_ZN19A
+0.0
-0.1
-0.1
-0.2
-0.2
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_180MIN_ZN15A
+0.2
-0.1
-0.2
-0.2
-0.2
phage
ICP3_phage_411_MOI_rep1
-0.2
+0.1
+0.1
-0.1
-0.3
phage
NoPhageControl
-0.2
-0.2
+0.1
-0.1
-0.1
lb_aerobic
LB_Aerobic_18HR_ZN18B
+0.2
+0.2
-0.3
-0.2
-0.2
phage
ICP1_phage_2.3_MOI_rep2
-0.1
+0.1
+0.2
-0.2
-0.3
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_180MIN_ZN15B
+0.2
+0.0
-0.2
-0.2
-0.2
phage
ICP3_phage_0.41_MOI_rep1
-0.1
+0.1
+0.5
-0.2
-0.3
lb_anaerobic
LB_Anaerobic_60MIN_ZN4B
+0.3
+0.2
-0.2
-0.1
-0.0
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_120MIN_ZN13A
+0.4
+0.2
+0.0
+0.0
-0.1
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
+0.4
+0.2
+0.1
-0.0
+0.0
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