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Fitness for 5 genes in
Vibrio cholerae E7946 ATCC 55056
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
CSW01_04125 and CSW01_04130 are separated by 10 nucleotides
CSW01_04130 and CSW01_04135 overlap by 4 nucleotides
CSW01_04135 and CSW01_04140 overlap by 23 nucleotides
CSW01_04140 and CSW01_04145 are separated by 346 nucleotides
CSW01_04125: CSW01_04125 - citrate (pro-3S)-lyase subunit beta, at 853,302 to 854,192
_04125
CSW01_04130: CSW01_04130 - citrate lyase subunit alpha, at 854,203 to 855,732
_04130
CSW01_04135: CSW01_04135 - apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 855,729 to 856,265
_04135
CSW01_04140: CSW01_04140 - triphosphoribosyl-dephospho-CoA synthase, at 856,243 to 857,184
_04140
CSW01_04145: CSW01_04145 - transporter, at 857,531 to 857,929
_04145
Group
Condition
CSW01
_04125
CSW01
_04130
CSW01
_04135
CSW01
_04140
CSW01
_04145
phage
ICP1_phage_235.3_MOI_rep2
-0.0
+0.2
-1.6
+0.3
-0.4
phage
ICP1_phage_2.3_MOI_rep2
+0.1
+0.2
-0.7
+0.2
-0.3
phage
ICP1_phage_0.23_MOI_rep1
+0.1
-0.3
-0.6
+0.1
+0.2
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_18HR_ZN21A
-0.3
-0.2
+0.1
-0.1
-0.1
phage
ICP3_phage_0.41_MOI_rep1
+0.2
+0.0
-0.6
-0.2
+0.2
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_18HR_ZN19B
-0.2
-0.3
+0.3
-0.1
-0.0
phage
ICP3_phage_411_MOI_rep2
+0.2
+0.2
-0.2
+0.1
-0.4
lb_anaerobic
LB_Anaerobic_180MIN_ZN16A
-0.0
-0.2
+0.4
+0.1
-0.2
phage
ICP3_phage_41.1_MOI_rep1
+0.4
-0.3
-0.1
+0.0
+0.2
lb_anaerobic
LB_Anaerobic_18HR_ZN20A
-0.1
-0.2
+0.4
+0.2
-0.1
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_180MIN_ZN15B
-0.1
-0.2
+0.6
+0.0
-0.1
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_180MIN_ZN15A
-0.1
-0.2
+0.5
+0.0
-0.1
lb_anaerobic
LB_Anaerobic_120MIN_ZN12B
-0.1
-0.0
+0.3
+0.2
-0.1
phage
ICP3_phage_4.1_MOI_rep2
-0.1
-0.0
-0.1
+0.4
+0.1
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_120MIN_ZN11A
-0.1
-0.2
+0.4
+0.2
-0.0
phage
ICP3_phage_0.41_MOI_rep2
+0.4
-0.0
-0.1
+0.2
-0.0
lb_aerobic
LB_Aerobic_120MIN_ZN10B
-0.1
-0.1
+0.5
+0.3
-0.1
phage
ICP3_phage_4.1_MOI_rep1
+0.4
-0.0
-0.1
+0.2
-0.0
lb_aerobic
LB_Aerobic_60MIN_ZN2B
+0.0
-0.2
+0.4
+0.2
+0.1
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
-0.1
-0.1
+0.6
+0.1
+0.1
lb_aerobic_phage
LB_Aerobic_PHAGE INFX20MPI_ZN6A
-0.0
-0.1
+0.3
+0.3
+0.1
phage
ICP3_phage_41.1_MOI_rep2
+0.4
-0.3
+0.4
+0.0
+0.1
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_18HR_ZN19A
+0.0
-0.2
+0.5
+0.2
+0.0
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
-0.0
-0.2
+0.7
+0.1
-0.0
phage
ICP1_phage_23.5_MOI_rep2
+0.2
-0.2
+0.4
+0.1
+0.2
lb_anaerobic
LB_Anaerobic_180MIN_ZN16B
+0.0
-0.0
+0.5
+0.2
+0.0
lb_anaerobic
LB_Anaerobic_60MIN_ZN4B
+0.1
-0.4
+0.8
+0.2
+0.0
phage
ICP1_phage_2.3_MOI_rep1
+0.0
+0.2
-0.1
+0.2
+0.4
phage
ICP3_phage_411_MOI_rep1
+0.3
+0.1
-0.1
+0.2
+0.4
phage
ICP1_phage_23.5_MOI_rep1
+0.2
+0.0
+0.5
+0.1
+0.5
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