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Fitness for 5 genes in
Vibrio cholerae E7946 ATCC 55056
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
CSW01_03090 and CSW01_03095 overlap by 28 nucleotides
CSW01_03095 and CSW01_03100 are separated by 55 nucleotides
CSW01_03100 and CSW01_03105 are separated by 295 nucleotides
CSW01_03105 and CSW01_03110 are separated by 74 nucleotides
CSW01_03090: CSW01_03090 - rRNA (cytidine-2'-O-)-methyltransferase, at 610,227 to 611,093
_03090
CSW01_03095: CSW01_03095 - hypothetical protein, at 611,066 to 611,251
_03095
CSW01_03100: CSW01_03100 - TetR/AcrR family transcriptional regulator, at 611,307 to 611,918
_03100
CSW01_03105: CSW01_03105 - hypoxanthine phosphoribosyltransferase, at 612,214 to 612,747
_03105
CSW01_03110: CSW01_03110 - carbonate dehydratase, at 612,822 to 613,490
_03110
Group
Condition
CSW01
_03090
CSW01
_03095
CSW01
_03100
CSW01
_03105
CSW01
_03110
lb_aerobic
LB_Aerobic_180MIN_ZN14A
+0.1
-0.6
+0.0
-0.3
+0.1
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
+0.1
-0.7
+0.6
-0.2
-0.1
phage
ICP1_phage_235.3_MOI_rep2
+0.3
+0.5
-0.8
+0.2
-0.3
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_180MIN_ZN15A
+0.0
-0.3
+0.6
-0.3
+0.1
lb_anaerobic
LB_Anaerobic_180MIN_ZN16B
+0.1
-0.2
+0.5
-0.3
-0.0
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_18HR_ZN21A
+0.1
-0.4
+0.3
+0.0
+0.2
phage
ICP3_phage_411_MOI_rep1
+0.2
+1.0
-1.2
+0.4
-0.1
lb_aerobic_phage
LB_Aerobic_PHAGE INFX20MPI_ZN6A
+0.1
-0.4
+0.3
-0.0
+0.3
phage
ICP3_phage_0.41_MOI_rep1
+0.5
+0.5
-0.8
+0.4
-0.2
phage
ICP1_phage_235.3_MOI_rep1
+0.0
+0.5
-0.4
+0.2
+0.0
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_60MIN_ZN5A
+0.2
-0.2
+0.5
+0.1
+0.0
phage
ICP1_phage_23.5_MOI_rep2
+0.4
+0.6
-0.6
+0.3
+0.0
phage
ICP3_phage_0.41_MOI_rep2
+0.4
+0.8
-0.9
+0.3
+0.1
phage
ICP3_phage_41.1_MOI_rep2
+0.3
+0.2
-0.4
+0.3
+0.2
lb_anaerobic
LB_Anaerobic_18HR_ZN20B
+0.2
-0.3
+0.4
+0.2
+0.2
lb_0.5%bileacids_anaerobic
LB_0.5%bileacids_Anaerobic_120MIN_ZN13B
+0.2
+0.3
+0.4
-0.2
+0.1
phage
ICP3_phage_41.1_MOI_rep1
-0.0
+1.1
-0.6
+0.3
+0.0
phage
ICP3_phage_411_MOI_rep2
+0.2
+0.7
+0.1
+0.5
-0.6
phage
ICP3_phage_4.1_MOI_rep1
+0.5
+0.5
-0.9
+0.4
+0.3
lb_aerobic
LB_Aerobic_18HR_ZN18B
-0.2
-0.2
+1.3
+0.0
+0.0
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_18HR_ZN19A
-0.2
-0.2
+1.3
+0.0
+0.1
phage
ICP1_phage_23.5_MOI_rep1
+0.2
+0.8
-0.1
+0.1
+0.1
phage
ICP1_phage_0.23_MOI_rep2
+0.3
+0.9
+0.3
+0.1
-0.5
phage
ICP1_phage_2.3_MOI_rep2
+0.2
+0.7
+0.3
+0.2
-0.2
phage
ICP3_phage_4.1_MOI_rep2
+0.2
+1.0
-0.7
+0.5
+0.3
phage
ICP1_phage_2.3_MOI_rep1
+0.4
+0.6
+0.0
+0.3
-0.0
phage
ICP1_phage_0.23_MOI_rep1
+0.5
+0.4
+0.7
-0.1
-0.1
lb_aerobic
LB_Aerobic_18HR_ZN18A
+0.3
+0.1
+0.7
+0.1
+0.4
lb_0.5%bileacids_aerobic
LB_0.5%bileacids_aerobic_18HR_ZN19B
-0.1
-0.1
+2.6
-0.1
+0.1
lb_anaerobic
LB_Anaerobic_18HR_ZN20A
-0.2
+0.1
+2.7
+0.0
+0.1
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