Fitness for 5 genes in Klebsiella michiganensis M5al

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BWI76_RS27760	BWI76_RS27765	BWI76_RS27770	BWI76_RS27775	BWI76_RS27780
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.2	-0.3	-0.5	N.D.	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.4	-0.0	-0.7	N.D.	-0.8
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-1.6	-0.1	-0.6	N.D.	-0.3
mixed community	LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	-0.4	-0.0	-0.9	N.D.	-1.3
mixed community	Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	-0.9	+0.0	-0.4	N.D.	-1.3
mixed community	Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL	-0.4	-0.2	-0.8	N.D.	-1.1
mixed community	LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL	+0.1	+0.1	+0.1	N.D.	-2.7
carbon source	D-Glucose-6-Phosphate (C)	-0.5	-0.2	+0.0	N.D.	-1.7
mixed community	RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	-0.1	+0.0	-1.0	N.D.	-1.3
mixed community	RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.7	+0.0	+0.7	N.D.	-2.1
mixed community	Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	+0.2	-0.0	-0.3	N.D.	-1.9
mixed community	RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	+0.5	-0.1	-0.4	N.D.	-1.9
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x	+0.0	+0.3	-0.9	N.D.	-1.3
mixed community	Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	-0.8	-0.0	+0.3	N.D.	-1.3
carbon source	2'-Deoxyinosine 5 mM (C)	-1.4	-0.3	+0.4	N.D.	-0.5
mixed community	Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	-1.4	+0.2	-1.1	N.D.	+0.5
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	-0.5	+0.6	+0.3	N.D.	-1.7
nitrogen source	D-Serine (N)	+0.5	-0.2	+0.5	N.D.	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.0	+0.7	-0.4	N.D.	+0.3
nitrogen source	D-Alanine (N)	+0.6	+0.5	-1.2	N.D.	-0.2
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	-1.0	-0.0	+0.5	N.D.	+1.1
nitrogen source	L-Tryptophan (N)	+0.9	-0.4	-0.6	N.D.	+1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-0.4	+1.2	N.D.	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+2.1	+0.6	-0.7	N.D.	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.0	-0.0	-0.3	N.D.	+1.2
mixed community	LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL	+1.5	+0.3	-0.6	N.D.	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.1	-0.4	N.D.	+3.2
phage	KLEB29 MOI 1	+0.8	+0.4	+0.4	N.D.	+0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	+0.8	+0.6	N.D.	+2.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+2.5	-0.0	+0.3	N.D.	+0.6