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Fitness for 5 genes in
Klebsiella michiganensis M5al
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BWI76_RS27485 and BWI76_RS27490 are separated by 10 nucleotides
BWI76_RS27490 and BWI76_RS27495 are separated by 266 nucleotides
BWI76_RS27495 and BWI76_RS27500 are separated by 165 nucleotides
BWI76_RS27500 and BWI76_RS27505 are separated by 150 nucleotides
BWI76_RS27485: BWI76_RS27485 - aminoimidazole riboside kinase, at 5,702,116 to 5,703,075
_RS27485
BWI76_RS27490: BWI76_RS27490 - sodium:galactoside symporter, at 5,703,086 to 5,704,420
_RS27490
BWI76_RS27495: BWI76_RS27495 - CDP-diacylglycerol diphosphatase, at 5,704,687 to 5,705,448
_RS27495
BWI76_RS27500: BWI76_RS27500 - sulfate transporter subunit, at 5,705,614 to 5,706,603
_RS27500
BWI76_RS27505: BWI76_RS27505 - septal ring assembly protein ZapB, at 5,706,754 to 5,706,993
_RS27505
Group
Condition
BWI76
_RS27485
BWI76
_RS27490
BWI76
_RS27495
BWI76
_RS27500
BWI76
_RS27505
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.5
-0.0
+0.2
-0.8
-1.1
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
+0.0
-0.1
-0.0
+0.1
-1.9
mixed community
Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
+0.2
-0.0
-0.5
-0.0
-1.4
mixed community
Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
+0.3
-0.0
-0.5
-0.4
-1.0
nitrogen fixation
D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days
-0.4
+0.1
-0.2
-0.2
-1.0
mixed community
LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
-0.3
+0.1
-0.3
+0.1
-1.2
stress
RCH2_defined_1percent_glucose with Chloride 600 mM
-0.2
+0.1
+0.3
-0.8
-1.0
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
-0.1
+0.1
-0.0
+0.1
-1.6
mixed community
Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
+0.1
-0.1
-0.3
-0.5
-0.7
stress
RCH2_defined_1percent_glucose with Chloride 600 mM
+0.2
-0.0
+0.4
-0.7
-1.4
rhizosphere
rhizosphere EcoFAB sample 3; outgrowth in LB
+0.1
-0.3
-0.1
+0.2
-1.3
stress
Fungal_growth_media_mCAFEs_v1 with Phosphomycin 0.01 mg/mL
+0.2
-0.2
-0.1
+0.0
-1.3
mixed community
Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
+0.3
+0.0
-0.3
-0.2
-1.0
stress
Paraquat dichloride 0.1 mg/ml
+0.1
-0.0
+0.3
-0.2
-1.3
supernatant
Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X
+0.1
-0.0
-0.1
+0.3
-1.3
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
+0.2
-0.1
+0.3
+0.1
-1.1
supernatant
Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
+0.1
-0.0
+0.1
+0.5
-0.9
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
+0.1
+0.4
+0.9
-1.7
supernatant
Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x
+0.4
-0.2
-0.3
+0.5
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
+0.6
+0.1
-0.1
+0.4
-0.8
stress
Cobalt chloride 0.5 mM
-0.5
-0.1
+0.1
+0.1
+1.2
phage
K. M5a1 KLEB23 MOI 10
-0.0
-0.1
-0.5
+0.2
+1.2
phage
K. M5a1 KLEB23 MOI 10
-0.2
+0.0
-0.0
-0.3
+1.6
phage
K. M5a1 KLEB23 MOI 1
-0.4
+0.0
+0.1
+0.3
+1.3
carbon source
Gly-Glu (C)
-0.2
+0.2
-0.4
+0.1
+1.7
phage
K. M5a1 KLEB26 MOI 0.1
+0.8
+0.3
+0.0
+0.5
-0.1
micoeukaryotes
Tetrahymena sp., Mixed culture-1
+0.7
+0.1
+0.5
+0.3
+0.3
phage
K. M5a1 KLEB22 MOI 10
+0.1
+0.1
-0.1
+0.4
+1.8
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.6
+0.1
+0.4
+0.9
+0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
-0.0
+0.1
+0.0
+0.9
+2.0
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