Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS26920 and BWI76_RS26925 overlap by 23 nucleotidesBWI76_RS26925 and BWI76_RS26930 overlap by 38 nucleotidesBWI76_RS26930 and BWI76_RS26935 are separated by 167 nucleotidesBWI76_RS26935 and BWI76_RS26940 are separated by 93 nucleotides BWI76_RS26920: BWI76_RS26920 - DNA-3-methyladenine glycosylase I, at 5,584,340 to 5,584,921 _RS26920 BWI76_RS26925: BWI76_RS26925 - N-acetyltransferase, at 5,584,899 to 5,585,345 _RS26925 BWI76_RS26930: BWI76_RS26930 - biotin sulfoxide reductase, at 5,585,308 to 5,587,638 _RS26930 BWI76_RS26935: BWI76_RS26935 - OmpA family lipoprotein, at 5,587,806 to 5,588,468 _RS26935 BWI76_RS26940: BWI76_RS26940 - transcriptional regulator, at 5,588,562 to 5,589,578 _RS26940
Group Condition BWI76_RS26920 BWI76_RS26925 BWI76_RS26930 BWI76_RS26935 BWI76_RS26940
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.0 +0.3 -0.1 -0.1 -4.4
carbon source Mix of RCH2_defined_noCarbon and Fungal_growth_media_mCAFEs_v1_noCarbon; D-Glucose at 55.5 mM +0.1 -0.0 -0.0 +0.2 -4.6
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM +0.2 +0.2 -0.1 +0.0 -4.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.33x; and D-Glucose 74 mM +0.1 -0.0 -0.0 -0.2 -3.6
carbon source D-Alanine (C) -0.6 -0.8 -0.1 -0.1 -2.1
carbon source D-Alanine (C) -0.5 -0.7 -0.1 -0.1 -2.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.4 -0.0 +0.2 -0.2 -3.8
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB +0.6 +0.5 -0.0 +0.0 -4.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM +0.4 +0.1 -0.0 -0.4 -3.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM +0.1 +0.2 -0.0 +0.1 -3.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.33x; and D-Glucose 74 mM +0.2 +0.2 -0.0 -0.1 -3.5
carbon source Mix of RCH2_defined_noCarbon and Fungal_growth_media_mCAFEs_v1_noCarbon; D-Glucose at 55.5 mM +0.0 +0.1 +0.2 -0.0 -3.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 83.25 mM +0.4 +0.2 -0.1 +0.1 -3.7
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.2 +0.2 -0.3 +0.1 -2.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -0.5 -0.0 -0.2 -1.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -0.2 -0.2 -0.4 -1.0
carbon source D,L-Malic Acid (C) +0.1 -0.1 -0.1 -0.0 -2.3
carbon source L-Glutamine (C) -0.2 +0.0 +0.1 -0.3 -2.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 +0.0 -0.5 +0.1 -1.1
carbon source D,L-Malic Acid (C) +0.3 +0.1 +0.0 -0.2 -2.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.0 +0.3 +0.1 -0.1 -2.3
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -1.1 -0.4 +0.1 +0.3 -0.8
carbon source Gly-Glu (C) +0.6 -0.4 -0.3 +0.1 -1.9
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM +0.1 +0.3 +0.1 +0.0 -2.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.4 +0.2 +0.2 -1.4
rhizosphere rhizosphere sample 1; outgrowth in LB +0.3 +0.7 +0.6 -0.2 -2.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 -0.4 +0.4 +0.2 -1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 -0.1 +0.8 +0.8 -1.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +1.3 +0.0 +0.5 -0.8
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x +1.2 -0.1 +0.2 -0.6 +0.6
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