Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS25895 and BWI76_RS25900 overlap by 1 nucleotidesBWI76_RS25900 and BWI76_RS25905 overlap by 1 nucleotidesBWI76_RS25905 and BWI76_RS25910 are separated by 166 nucleotidesBWI76_RS25910 and BWI76_RS25915 are separated by 222 nucleotides BWI76_RS25895: BWI76_RS25895 - sulfurtransferase TusC, at 5,356,494 to 5,356,853 _RS25895 BWI76_RS25900: BWI76_RS25900 - sulfurtransferase TusD, at 5,356,853 to 5,357,239 _RS25900 BWI76_RS25905: BWI76_RS25905 - hypothetical protein, at 5,357,239 to 5,357,961 _RS25905 BWI76_RS25910: BWI76_RS25910 - peptidyl-prolyl cis-trans isomerase, at 5,358,128 to 5,358,946 _RS25910 BWI76_RS25915: BWI76_RS25915 - protein SlyX, at 5,359,169 to 5,359,387 _RS25915
Group Condition BWI76_RS25895 BWI76_RS25900 BWI76_RS25905 BWI76_RS25910 BWI76_RS25915
nitrogen source Glucuronamide (N) N.D. N.D. -0.2 -3.8 +0.4
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -2.0 -0.6 +0.2
stress Sisomicin 0.008 mg/ml N.D. N.D. -0.4 -1.2 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -1.7 -0.5 +0.0
nitrogen source L-tyrosine (N) N.D. N.D. -0.3 -1.7 +0.1
carbon source D-Lactate (C) N.D. N.D. -2.2 -0.0 +0.5
carbon source D-Lactate (C) N.D. N.D. -1.7 -0.2 +0.2
mixed community LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL N.D. N.D. -0.8 -1.6 +0.8
phage KLEB17 MOI 1 N.D. N.D. -0.8 +0.4 -1.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. +0.3 -1.5 -0.2
stress Cobalt chloride 0.5 mM N.D. N.D. -0.4 +0.6 -1.5
nitrogen source L-Isoleucine (N) N.D. N.D. +0.5 -1.3 -0.5
stress RCH2_defined_1percent_glucose with Chloride 600 mM N.D. N.D. -1.0 -0.8 +0.8
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB N.D. N.D. +0.1 -1.6 +0.5
carbon source D-Alanine (C) N.D. N.D. -0.3 -1.1 +0.7
lb dilute Dilute LB (1/2) N.D. N.D. -1.3 +0.2 +0.5
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x N.D. N.D. -1.4 -0.0 +1.0
carbon source Gly-Glu (C) N.D. N.D. -1.0 +0.9 -0.3
mixed community LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL N.D. N.D. -0.9 -0.5 +1.1
nitrogen source Thymine (N) N.D. N.D. +1.1 -1.3 +0.0
nitrogen source L-Phenylalanine (N) N.D. N.D. +0.0 -1.2 +1.0
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. N.D. -1.0 -0.2 +1.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.9 +1.6 -0.4
phage KLEB16 MOI 10 N.D. N.D. -0.8 +0.1 +1.3
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days N.D. N.D. +0.6 -0.9 +1.0
micoeukaryotes Tetrahymena sp., Mixed culture-1 N.D. N.D. -0.7 +0.9 +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -1.3 -0.2 +2.6
nitrogen source L-aspartic (N) N.D. N.D. +2.0 +0.2 -0.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x N.D. N.D. +1.9 -0.0 +0.4
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x N.D. N.D. +2.0 +0.3 -0.0
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