Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS25595 and BWI76_RS25600 are separated by 39 nucleotidesBWI76_RS25600 and BWI76_RS25605 are separated by 14 nucleotidesBWI76_RS25605 and BWI76_RS25610 are separated by 56 nucleotidesBWI76_RS25610 and BWI76_RS25615 are separated by 181 nucleotides BWI76_RS25595: BWI76_RS25595 - 5S ribosomal RNA, at 5,320,161 to 5,320,276 _RS25595 BWI76_RS25600: BWI76_RS25600 - tRNA-Thr, at 5,320,316 to 5,320,391 _RS25600 BWI76_RS25605: BWI76_RS25605 - 5S ribosomal RNA, at 5,320,406 to 5,320,521 _RS25605 BWI76_RS25610: BWI76_RS25610 - 23S ribosomal RNA, at 5,320,578 to 5,323,505 _RS25610 BWI76_RS25615: BWI76_RS25615 - tRNA-Glu, at 5,323,687 to 5,323,761 _RS25615
Group Condition BWI76_RS25595 BWI76_RS25600 BWI76_RS25605 BWI76_RS25610 BWI76_RS25615
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM N.D. -5.1 N.D. N.D. N.D.
nitrogen source Uridine (N) N.D. -5.0 N.D. N.D. N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM N.D. -5.0 N.D. N.D. N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. -4.9 N.D. N.D. N.D.
nitrogen source Glucuronamide (N) N.D. -4.9 N.D. N.D. N.D.
nitrogen source Glucuronamide (N) N.D. -4.9 N.D. N.D. N.D.
nitrogen source Thymine (N) N.D. -4.8 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -4.8 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -4.7 N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. -4.7 N.D. N.D. N.D.
nitrogen source Gly-DL-Asp (N) N.D. -4.5 N.D. N.D. N.D.
phage KLEB20 MOI 0.1 N.D. -4.4 N.D. N.D. N.D.
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days N.D. -4.4 N.D. N.D. N.D.
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB N.D. -4.4 N.D. N.D. N.D.
carbon source D-Sorbitol (C) N.D. -4.3 N.D. N.D. N.D.
phage KLEB15 MOI 0.1 N.D. -4.3 N.D. N.D. N.D.
phage KLEB17 MOI 1 N.D. -4.2 N.D. N.D. N.D.
phage KLEB17 MOI 1 N.D. -4.1 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -4.1 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -3.9 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -3.9 N.D. N.D. N.D.
exudates RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 0.5x N.D. -3.9 N.D. N.D. N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. -3.9 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -3.9 N.D. N.D. N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. -3.8 N.D. N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. -3.7 N.D. N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM N.D. -3.7 N.D. N.D. N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. -3.6 N.D. N.D. N.D.
stress Sisomicin 0.008 mg/ml N.D. +5.9 N.D. N.D. N.D.
stress Sisomicin 0.008 mg/ml N.D. +7.6 N.D. N.D. N.D.
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