Fitness for 5 genes in Klebsiella michiganensis M5al

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BWI76_RS25395	BWI76_RS25400	BWI76_RS25405	BWI76_RS25410	BWI76_RS25415
carbon source	D,L-Malic Acid (C)	-0.0	+0.0	+0.6	-2.2	-2.8
carbon source	D,L-Malic Acid (C)	+0.0	+0.1	+0.5	-2.0	-2.3
rhizosphere	rhizosphere EcoFAB sample 3; outgrowth in LB	-0.7	-0.3	-0.1	-1.0	-1.4
stress	Sisomicin 0.008 mg/ml	-0.4	-0.6	-0.3	-0.3	-0.8
phage	KLEB1 MOI 10	-0.2	-0.2	-0.7	-0.1	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	-0.3	+0.4	-0.3	-1.5
mixed community	RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.3	-0.2	+0.2	-0.1	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	+0.2	-0.3	-0.3	-1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.3	-0.2	-0.1	-1.0
stress	nitrite 20 mM	+0.0	-0.3	+0.2	-0.5	-0.9
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	+0.1	-0.3	-0.2	+0.2	-1.1
mixed community	RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.3	+0.2	-0.0	-0.2	-0.9
mixed community	RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.2	-0.1	+0.2	-0.3	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.6	+0.2	-0.7	-0.5
phage	KLEB13 MOI 0.1	+0.1	-0.6	+0.2	-0.2	-0.8
phage	K. M5a1 KLEB26 MOI 0.1	-0.2	+0.5	-0.2	-0.2	-1.1
mixed community	RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.4	-0.2	+0.3	-0.4	-0.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.3	+0.3	+0.4	-0.2	-1.2
phage	KLEB17 MOI 0.1	-0.3	-0.4	+0.1	+0.3	-0.7
mixed community	LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL	-0.2	-0.2	+0.4	+0.5	-0.4
supernatant	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml	-0.1	-0.6	+0.3	+0.0	+0.7
mixed community	LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	-0.2	+0.5	+0.7	-0.2	-0.2
mixed community	Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	-0.2	+0.4	+0.3	+0.6	-0.3
mixed community	LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL	-0.2	-0.2	+0.5	+0.3	+0.5
mixed community	Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL	-0.2	-0.3	+0.3	+0.4	+0.7
mixed community	Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	-0.0	-0.4	+0.2	+0.4	+1.0
stress	Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL	-0.2	-0.4	+0.2	+0.3	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	+0.2	+0.1	-0.2	+1.6
carbon source	succinate (C)	+0.1	+0.0	+0.2	+1.0	+1.1
nitrogen fixation	L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days	-0.1	+0.0	-0.0	+7.6	+7.5