Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS25235 and BWI76_RS25240 are separated by 14 nucleotidesBWI76_RS25240 and BWI76_RS25245 are separated by 14 nucleotidesBWI76_RS25245 and BWI76_RS25250 overlap by 4 nucleotidesBWI76_RS25250 and BWI76_RS25255 overlap by 32 nucleotides BWI76_RS25235: BWI76_RS25235 - calcium/sodium antiporter, at 5,247,422 to 5,248,399 _RS25235 BWI76_RS25240: BWI76_RS25240 - D-arabinose 5-phosphate isomerase, at 5,248,414 to 5,249,400 _RS25240 BWI76_RS25245: BWI76_RS25245 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 5,249,415 to 5,249,981 _RS25245 BWI76_RS25250: BWI76_RS25250 - LPS export ABC transporter periplasmic protein LptC, at 5,249,978 to 5,250,553 _RS25250 BWI76_RS25255: BWI76_RS25255 - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 5,250,522 to 5,251,067 _RS25255
Group Condition BWI76_RS25235 BWI76_RS25240 BWI76_RS25245 BWI76_RS25250 BWI76_RS25255
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB -1.6 -0.9 -0.5 N.D. N.D.
phage K. M5a1 KLEB23 MOI 10 -0.2 -0.4 -2.0 N.D. N.D.
stress Sisomicin 0.008 mg/ml -0.9 -1.3 -0.4 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -1.0 -0.8 -0.6 N.D. N.D.
phage KLEB14 MOI 0.1 -0.3 -0.5 -1.5 N.D. N.D.
mixed community LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL -1.1 -0.6 -0.3 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.2 -1.7 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.2 -0.7 -1.0 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 -0.3 -1.3 N.D. N.D.
carbon source 2'-Deoxycytidine 5 mM (C) +0.3 +0.1 -1.6 N.D. N.D.
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.5 -0.9 -0.4 N.D. N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.6 +0.3 -1.1 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +1.1 -1.2 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml +0.2 -0.9 +0.8 N.D. N.D.
phage KLEB1 MOI 10 -0.2 +1.8 -1.5 N.D. N.D.
stress RCH2_defined_1percent_glucose with Chloride 600 mM -1.0 +0.6 +0.8 N.D. N.D.
nitrogen source Glucuronamide (N) -0.5 -0.2 +1.3 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -0.2 -0.5 +1.3 N.D. N.D.
phage KLEB17 MOI 1 -1.2 +1.8 +0.1 N.D. N.D.
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.4 -0.5 +1.1 N.D. N.D.
phage KLEB1 MOI 10 -0.8 +1.3 +0.6 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM +0.4 -0.5 +1.2 N.D. N.D.
phage KLEB17 MOI 1 -0.4 +1.5 +0.1 N.D. N.D.
nitrogen source L-Cysteine (N) -0.3 +0.3 +1.5 N.D. N.D.
phage KLEB20 MOI 1 -0.1 +1.3 +0.4 N.D. N.D.
phage KLEB17 MOI 0.1 -0.2 +1.4 +0.5 N.D. N.D.
phage KLEB20 MOI 0.1 -0.2 +1.1 +0.9 N.D. N.D.
carbon source L-Sorbose (C) +0.5 +0.6 +0.9 N.D. N.D.
phage K. M5a1 KLEB26 MOI 0.1 +0.0 +1.3 +0.8 N.D. N.D.
nitrogen source Gly-DL-Asp (N) +0.2 +0.4 +1.5 N.D. N.D.
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