Fitness for 5 genes in Klebsiella michiganensis M5al

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BWI76_RS24865	BWI76_RS24870	BWI76_RS24875	BWI76_RS24880	BWI76_RS24885
phage	KLEB17 MOI 1	-0.0	+0.0	+0.1	-0.4	-4.7
nitrogen source	Glucuronamide (N)	+0.1	-0.2	+0.2	-0.2	-4.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+0.5	-0.4	-0.5	-4.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.0	-0.4	-0.0	-4.3
nitrogen source	Adenosine (N)	+0.0	+0.1	-0.0	-0.1	-3.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	+0.2	-0.2	-0.1	-2.9
stress	Cobalt chloride 0.5 mM	-0.1	+0.2	-0.2	+0.2	-3.3
carbon source	D-Glucose 2 mM (C)	+0.1	-0.0	+0.0	-0.0	-3.1
phage	K. M5a1 KLEB26 MOI 0.1	-0.0	-0.1	-0.3	-1.0	-1.3
stress	Sisomicin 0.008 mg/ml	-0.2	+0.2	+0.1	-0.8	-1.7
phage	KLEB13 MOI 0.1	+0.0	-0.0	+0.3	+0.3	-2.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.1	-0.2	-0.5	+0.4	-1.7
nitrogen source	L-Cysteine (N)	-0.1	+0.2	+0.2	-0.8	-1.6
ecofab	RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL	+0.1	+0.4	-0.0	-0.3	-2.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	+0.2	-0.4	-0.1	-1.9
mixed community	Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	+0.0	+0.1	-0.2	+0.4	-2.2
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x	-0.1	+0.2	+0.3	-0.1	-2.2
mixed community	LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL	-0.0	-0.1	+0.0	+0.5	-2.2
stress	RCH2_defined_1percent_glucose with Betaine 100 uM	+0.1	-0.1	-0.1	+0.4	-2.1
exudates	RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x	+0.1	+0.1	+0.4	+0.0	-2.2
supernatant	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml	+0.0	+0.2	-0.1	+0.4	-2.1
stress	Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL	-0.0	+0.3	+0.1	+0.4	-2.3
stress	Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM	+0.1	+0.5	+0.2	-0.3	-1.7
mixed community	RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	-0.1	+0.2	+0.2	+0.4	-1.9
mixed community	RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	-0.1	+0.1	+0.5	+0.6	-2.2
mixed community	RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.1	+0.3	+0.2	+0.3	-1.9
mixed community	RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.1	+0.2	+0.2	+0.6	-1.8
mixed community	LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL	-0.0	+0.4	+0.2	+0.7	-2.1
stress	Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL	+0.0	+0.6	+0.3	+0.9	-1.7
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.2	-0.3	+0.3	-0.6	+4.7