Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS24600 and BWI76_RS24605 are separated by 10 nucleotidesBWI76_RS24605 and BWI76_RS24610 are separated by 66 nucleotidesBWI76_RS24610 and BWI76_RS24615 are separated by 280 nucleotidesBWI76_RS24615 and BWI76_RS24620 are separated by 236 nucleotides BWI76_RS24600: BWI76_RS24600 - dihydroxyacetone kinase, at 5,127,487 to 5,128,119 _RS24600 BWI76_RS24605: BWI76_RS24605 - dihydroxyacetone kinase subunit DhaM, at 5,128,130 to 5,129,551 _RS24605 BWI76_RS24610: BWI76_RS24610 - dihydroxyacetone kinase, at 5,129,618 to 5,131,267 _RS24610 BWI76_RS24615: BWI76_RS24615 - siderophore-interacting protein, at 5,131,548 to 5,132,321 _RS24615 BWI76_RS24620: BWI76_RS24620 - PadR family transcriptional regulator, at 5,132,558 to 5,133,112 _RS24620
Group Condition BWI76_RS24600 BWI76_RS24605 BWI76_RS24610 BWI76_RS24615 BWI76_RS24620
exudates RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x -5.3 -2.4 -2.2 -0.1 -0.2
mixed community LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL -5.2 -1.7 -0.4 -0.0 -0.7
mixed community LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL -5.8 -1.6 -0.2 +0.1 +0.1
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x -5.7 -2.2 +0.4 +0.2 -0.0
stress RCH2_defined_1percent_glucose with Chloride 600 mM -1.2 -2.9 +0.2 -0.0 -3.1
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml -3.9 -2.8 -0.5 +0.3 +0.1
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x -1.3 -2.3 -1.5 -0.2 -1.3
stress RCH2_defined_1percent_glucose with Chloride 600 mM -1.4 -2.6 +0.5 -0.1 -2.9
stress Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM -2.7 -2.3 -0.3 -0.2 -0.9
mixed community RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x -1.4 -2.9 -0.9 -0.7 -0.5
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and 2,2'-Dipyridyl 50 uM -3.6 -1.7 -0.6 -0.1 -0.3
mixed community LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL -2.6 -2.4 -0.3 -0.2 -0.7
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and 2,2'-Dipyridyl 50 uM -1.2 -2.6 -0.7 -0.1 -1.6
mixed community LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL -1.9 -2.3 -0.8 -0.4 -0.8
mixed community RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x -3.9 -2.2 +0.3 -0.0 -0.3
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml -3.1 -2.8 -0.3 +0.2 -0.1
mixed community RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x -3.2 -1.8 -0.2 -0.0 -0.9
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL -2.5 -2.9 +0.2 -0.2 -0.4
carbon source RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x -0.7 -2.4 -1.8 -0.1 -0.8
mixed community Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL -3.2 -2.1 -0.1 +0.3 -0.5
mixed community RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x -1.4 -2.8 -0.8 -0.0 -0.5
stress Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL -2.3 -2.8 -0.0 +0.3 -0.6
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml -1.4 -2.7 -0.5 -0.2 -0.4
mixed community Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL -2.2 -2.8 -0.1 +0.5 -0.8
mixed community LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL -2.1 -2.1 -0.3 -0.3 -0.6
stress Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL -1.4 -2.9 -0.8 -0.0 -0.2
mixed community LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL -2.5 -2.7 -0.0 +0.3 -0.3
mixed community Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL -1.7 -2.6 -0.6 +0.1 -0.4
mixed community LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL -1.3 -2.0 -1.1 +0.3 -0.8
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB -2.2 -3.1 +1.1 +0.1 -0.5
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