Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS24185 and BWI76_RS24190 are separated by 105 nucleotidesBWI76_RS24190 and BWI76_RS24195 are separated by 135 nucleotidesBWI76_RS24195 and BWI76_RS24200 are separated by 163 nucleotidesBWI76_RS24200 and BWI76_RS24205 are separated by 102 nucleotides BWI76_RS24185: BWI76_RS24185 - membrane protein, at 5,042,528 to 5,043,244 _RS24185 BWI76_RS24190: BWI76_RS24190 - tRNA-Phe, at 5,043,350 to 5,043,425 _RS24190 BWI76_RS24195: BWI76_RS24195 - anion transporter, at 5,043,561 to 5,044,949 _RS24195 BWI76_RS24200: BWI76_RS24200 - hypothetical protein, at 5,045,113 to 5,045,392 _RS24200 BWI76_RS24205: BWI76_RS24205 - cystathionine beta-synthase, at 5,045,495 to 5,046,865 _RS24205
Group Condition BWI76_RS24185 BWI76_RS24190 BWI76_RS24195 BWI76_RS24200 BWI76_RS24205
carbon source succinate (C) -0.4 N.D. -2.3 +0.2 -0.7
carbon source succinate (C) -0.4 N.D. -2.0 +0.0 -0.8
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB +0.2 N.D. -0.4 -2.1 -0.2
nitrogen source D-Alanine (N) -1.0 N.D. -0.1 -0.7 -0.5
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.4 N.D. -0.2 -0.8 -0.5
mixed community RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x -0.3 N.D. -0.2 -0.8 -0.4
mixed community RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x -0.1 N.D. -0.2 -1.5 +0.2
rhizosphere rhizosphere sample 1; outgrowth in LB -0.1 N.D. -0.3 -0.8 -0.3
mixed community RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x -0.5 N.D. -0.2 -0.8 +0.1
mixed community LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL -0.6 N.D. -0.2 -0.7 +0.1
carbon source RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 0.1 x -0.6 N.D. -0.2 -0.7 +0.1
stress Nickel (II) chloride 1.5 mM -0.4 N.D. +0.1 -0.6 -0.4
nitrogen source L-Arginine (N) -0.5 N.D. -0.2 -0.9 +0.3
stress Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM -0.4 N.D. -0.1 -0.8 +0.3
nitrogen source D-Serine (N) -1.1 N.D. +0.1 -0.2 +0.1
nitrogen source L-Arginine (N) -0.0 N.D. -0.2 -1.3 +0.4
nitrogen source L-Valine (N) -0.5 N.D. -0.1 -0.6 +0.2
nitrogen source L-Phenylalanine (N) -0.5 N.D. +0.0 -0.7 +0.2
stress Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL -0.4 N.D. -0.1 -0.7 +0.2
mixed community LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL -0.5 N.D. -0.1 -0.5 +0.4
mixed community LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL -0.5 N.D. -0.1 -0.5 +0.3
phage KLEB17 MOI 1 -0.5 N.D. -0.2 +0.5 -0.5
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.4 N.D. -0.4 -0.7 +0.2
mixed community LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL -1.0 N.D. +0.0 +0.3 +0.3
exudates RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x -0.8 N.D. -0.0 +0.7 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 N.D. +0.1 -0.4 +0.1
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +1.0 N.D. -0.3 +0.5 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 N.D. +0.1 +0.6 +0.8
phage K. M5a1 KLEB26 MOI 0.1 +0.1 N.D. +0.4 +1.0 +0.3
micoeukaryotes Tetrahymena sp., Mixed culture-1 +0.6 N.D. -0.0 +0.3 +0.9
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