Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS23785 and BWI76_RS23790 are separated by 52 nucleotidesBWI76_RS23790 and BWI76_RS23795 are separated by 42 nucleotidesBWI76_RS23795 and BWI76_RS23800 are separated by 9 nucleotidesBWI76_RS23800 and BWI76_RS23805 are separated by 155 nucleotides BWI76_RS23785: BWI76_RS23785 - hypothetical protein, at 4,965,226 to 4,965,942 _RS23785 BWI76_RS23790: BWI76_RS23790 - isopentenyl-diphosphate Delta-isomerase, at 4,965,995 to 4,966,543 _RS23790 BWI76_RS23795: BWI76_RS23795 - lysine--tRNA ligase, at 4,966,586 to 4,968,103 _RS23795 BWI76_RS23800: BWI76_RS23800 - peptide chain release factor 2, at 4,968,113 to 4,969,141 _RS23800 BWI76_RS23805: BWI76_RS23805 - ssDNA exonuclease RecJ, at 4,969,297 to 4,971,030 _RS23805
Group Condition BWI76_RS23785 BWI76_RS23790 BWI76_RS23795 BWI76_RS23800 BWI76_RS23805
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 N.D. N.D. N.D. -1.8
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.5 N.D. N.D. N.D. -1.5
supernatant control Vogels_fungal_media 0.1X -0.4 N.D. N.D. N.D. -1.5
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB -0.5 N.D. N.D. N.D. -1.3
phage KLEB31 MOI 1 -0.9 N.D. N.D. N.D. -0.7
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x -0.9 N.D. N.D. N.D. -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 N.D. N.D. N.D. -0.8
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.0 N.D. N.D. N.D. -1.5
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and 2,2'-Dipyridyl 50 uM -0.1 N.D. N.D. N.D. -1.3
phage KLEB20 MOI 0.1 -1.0 N.D. N.D. N.D. -0.4
stress Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM +0.3 N.D. N.D. N.D. -1.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.2 N.D. N.D. N.D. -1.2
phage KLEB16 MOI 0.1 -0.5 N.D. N.D. N.D. -0.9
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB -0.2 N.D. N.D. N.D. -1.2
carbon source acetate (C) -1.2 N.D. N.D. N.D. -0.1
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -0.2 N.D. N.D. N.D. -1.2
carbon source Glycerol (C) -0.6 N.D. N.D. N.D. -0.8
stress Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM +0.0 N.D. N.D. N.D. -1.4
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.9 N.D. N.D. N.D. -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 N.D. N.D. N.D. -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 N.D. N.D. N.D. -1.0
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml +0.4 N.D. N.D. N.D. -1.6
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.2 N.D. N.D. N.D. -1.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.3 N.D. N.D. N.D. -1.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.5 N.D. N.D. N.D. -1.3
stress Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL +0.7 N.D. N.D. N.D. -0.7
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x +0.7 N.D. N.D. N.D. -0.7
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL +0.8 N.D. N.D. N.D. -0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.2 N.D. N.D. N.D. -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.1 N.D. N.D. N.D. -0.7
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BWI76_RS23785
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BWI76_RS23790
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BWI76_RS23805
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