Fitness for 5 genes in Klebsiella michiganensis M5al

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BWI76_RS23690	BWI76_RS23695	BWI76_RS23700	BWI76_RS23705	BWI76_RS23710
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.4	-3.6	-4.5	-3.9	-3.8
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.2	-4.3	-3.5	-2.4	-2.9
nitrogen source	Cytosine (N)	-4.6	-0.3	-0.2	+0.1	+0.1
mixed community	Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	-2.9	+0.3	+0.1	-0.1	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.6	+0.3	-0.2	-0.0	+0.2
phage	KLEB1 MOI 10	-2.3	-0.1	-0.2	+0.3	+0.1
phage	KLEB31 MOI 1	-1.6	+0.0	+0.4	-1.1	+0.1
stress	Fungal_growth_media_mCAFEs_v1 with Aluminum chloride 2 mM	-2.6	+0.2	+0.1	+0.3	+0.0
mixed community	RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	-2.3	+0.2	-0.1	+0.1	+0.3
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	-1.2	+0.3	-0.6	+0.8	-0.7
exudates	RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x	-1.4	-0.2	-0.3	+0.2	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.9	+0.1	+0.2	+0.3	+0.4
mixed community	LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	-1.2	-0.3	-0.3	+0.3	+0.7
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x	-0.9	-0.4	-0.3	+0.6	+0.6
stress	Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM	-1.8	+0.2	+0.3	+0.2	+0.8
supernatant	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml	-1.1	-0.0	-0.4	+0.7	+0.6
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and 2,2'-Dipyridyl 50 uM	-1.2	-0.1	+0.1	+0.7	+0.7
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.4	-0.2	-0.6	+1.1	-0.4
mixed community	RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	-0.5	-0.1	-0.3	+1.3	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.9	+0.1	+0.2	+1.5	+0.4
mixed community	RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	+0.9	-0.4	-0.3	+1.1	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+2.5	-0.6	+0.1	+0.2	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.8	+0.2	+0.2	-0.4	+0.1
mixed community	LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	+1.0	+0.2	-0.4	+1.1	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.4	-0.3	+1.1	-0.2	+0.1
nitrogen fixation	D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days	+1.2	+0.5	-0.2	+0.4	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.2	+0.5	-0.2	+1.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4	+0.0	-0.0	+2.9	+0.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.3	+0.6	+0.2	+2.1	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+5.2	-0.1	-0.4	+0.1	+0.2