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Fitness for 5 genes in
Klebsiella michiganensis M5al
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
BWI76_RS23305 and BWI76_RS23310 are separated by 204 nucleotides
BWI76_RS23310 and BWI76_RS23315 overlap by 8 nucleotides
BWI76_RS23315 and BWI76_RS23320 are separated by 23 nucleotides
BWI76_RS23320 and BWI76_RS23325 are separated by 19 nucleotides
BWI76_RS23305: BWI76_RS23305 - NADP(H)-dependent aldo-keto reductase, at 4,859,627 to 4,860,667
_RS23305
BWI76_RS23310: BWI76_RS23310 - lysophospholipid transporter LplT, at 4,860,872 to 4,862,065
_RS23310
BWI76_RS23315: BWI76_RS23315 - acyl-[ACP]--phospholipid O-acyltransferase, at 4,862,058 to 4,864,217
_RS23315
BWI76_RS23320: BWI76_RS23320 - hypothetical protein, at 4,864,241 to 4,864,432
_RS23320
BWI76_RS23325: BWI76_RS23325 - hypothetical protein, at 4,864,452 to 4,864,745
_RS23325
Group
Condition
BWI76
_RS23305
BWI76
_RS23310
BWI76
_RS23315
BWI76
_RS23320
BWI76
_RS23325
nitrogen source
Glucuronamide (N)
-0.9
-0.4
-0.1
-1.7
-1.1
nitrogen source
Uridine (N)
+0.3
-0.3
+0.1
-2.4
-0.7
stress
Sisomicin 0.008 mg/ml
+0.3
-0.5
-0.3
-1.2
-0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
+0.2
-0.3
-0.2
-2.1
+0.3
nitrogen source
L-Tryptophan (N)
-0.6
-0.2
+0.1
-1.9
+0.6
mixed community
Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL
-0.5
-0.9
-1.2
+0.5
+0.2
stress
perchlorate 100 mM
+0.3
-1.1
-0.5
+0.4
-0.8
exudates
RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x
-0.9
-0.1
+0.1
-1.3
+0.7
mixed community
Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
+0.2
-0.7
-0.5
-1.4
+0.8
stress
RCH2_defined_1percent_glucose with Chloride 600 mM
-0.7
-0.3
-0.3
+1.2
-1.4
phage
KLEB1 MOI 10
-0.5
-0.7
+0.2
+0.5
-0.9
nitrogen source
L-Arginine (N)
-0.7
+0.2
+0.0
+1.4
-1.5
carbon source
succinate (C)
+1.0
+0.2
+0.6
-1.6
-0.3
mixed community
Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL
-0.6
-0.9
-0.2
+1.2
+0.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+0.3
+0.3
-0.2
-2.0
+1.6
mixed community
LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
+0.4
-0.5
-0.6
+1.5
-0.8
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
-0.3
+1.2
-0.4
-0.4
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.4
+0.7
+0.0
-0.6
+1.5
mixed community
Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL
+0.0
-0.5
-0.2
+1.4
+0.7
nitrogen source
D-Serine (N)
+0.4
+0.3
-0.1
+2.2
-1.4
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
+0.2
+1.5
+0.3
-0.7
+0.5
stress
Chloramphenicol 0.001 mg/ml
+0.8
+0.7
+0.3
+0.8
-0.7
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI
+1.8
+0.3
+0.5
-0.6
-0.1
phage
KLEB16 MOI 10
+0.9
+0.0
-0.0
-0.5
+1.5
agar plate interaction
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
-0.1
+0.9
+1.1
+1.1
-0.4
nitrogen source
Urea (N)
+0.1
+0.9
+0.7
+1.2
-0.1
stress
Cobalt chloride 0.5 mM
-0.4
+0.2
+0.6
+2.1
+0.7
exudates
RCH2_defined_noCarbon with Brachypodium distachyon 27-day exudates 3 x
-0.2
+0.1
-0.1
+2.2
+1.6
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
+0.0
+0.5
-0.2
+0.8
+2.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-0.3
+0.4
-0.0
+5.2
-0.4
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