Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS23270 and BWI76_RS23275 are separated by 12 nucleotidesBWI76_RS23275 and BWI76_RS23280 are separated by 39 nucleotidesBWI76_RS23280 and BWI76_RS23285 are separated by 219 nucleotidesBWI76_RS23285 and BWI76_RS23290 are separated by 16 nucleotides BWI76_RS23270: BWI76_RS23270 - phosphoenolpyruvate--protein phosphotransferase PtsP, at 4,854,084 to 4,856,330 _RS23270 BWI76_RS23275: BWI76_RS23275 - RNA pyrophosphohydrolase, at 4,856,343 to 4,856,873 _RS23275 BWI76_RS23280: BWI76_RS23280 - hypothetical protein, at 4,856,913 to 4,857,095 _RS23280 BWI76_RS23285: BWI76_RS23285 - hypothetical protein, at 4,857,315 to 4,857,539 _RS23285 BWI76_RS23290: BWI76_RS23290 - DNA mismatch repair protein MutH, at 4,857,556 to 4,858,248 _RS23290
Group Condition BWI76_RS23270 BWI76_RS23275 BWI76_RS23280 BWI76_RS23285 BWI76_RS23290
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.1 N.D. N.D. -2.6 -0.2
nitrogen source L-Arginine (N) -1.6 N.D. N.D. -0.7 -0.1
stress Fungal_growth_media_mCAFEs_v1 with Phosphomycin 0.01 mg/mL +0.3 N.D. N.D. -2.2 -0.3
stress Fungal_growth_media_mCAFEs_v1 with Carbenicillin 0.008 mg/mL +0.2 N.D. N.D. -1.9 -0.2
nitrogen source nitrate (N) -1.3 N.D. N.D. -0.6 +0.0
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma virens G41 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1 x and Iron (II) 0.002 mg/ml +0.1 N.D. N.D. -1.3 -0.5
mixed community LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL -0.3 N.D. N.D. -1.5 +0.1
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days -2.1 N.D. N.D. +0.5 +0.1
mixed community RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x +0.2 N.D. N.D. -1.5 -0.2
mixed community RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.6 N.D. N.D. -1.8 -0.0
nitrogen source Inosine (N) -1.5 N.D. N.D. +0.2 +0.2
carbon source D-Glucose 20 mM (C) -1.4 N.D. N.D. +0.4 -0.1
mixed community RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.7 N.D. N.D. -1.4 -0.4
nitrogen source L-Arginine (N) -1.2 N.D. N.D. +0.7 -0.5
mixed community RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x +0.6 N.D. N.D. -0.9 -0.7
supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -1.1 N.D. N.D. -0.2 +0.7
stress Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL +0.7 N.D. N.D. -1.5 +0.3
stress Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL +0.4 N.D. N.D. -1.4 +0.5
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.9 N.D. N.D. -0.8 -0.4
carbon source 2-Deoxyadenosine 4 mM (C) +1.1 N.D. N.D. -1.2 -0.0
stress Paraquat dichloride 0.1 mg/ml +0.5 N.D. N.D. -0.8 +0.5
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB +0.6 N.D. N.D. -1.0 +0.8
phage KLEB14 MOI 0.1 -0.4 N.D. N.D. +1.3 +0.2
nitrogen source Thymine (N) +1.8 N.D. N.D. -0.2 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 N.D. N.D. +1.9 -0.0
stress Sisomicin 0.008 mg/ml +3.6 N.D. N.D. -1.9 +0.3
stress Sisomicin 0.008 mg/ml +4.1 N.D. N.D. -2.7 +1.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 N.D. N.D. +2.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.0 N.D. N.D. +4.3 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 N.D. N.D. +4.4 +0.1
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