Fitness for 5 genes in Klebsiella michiganensis M5al

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BWI76_RS23245	BWI76_RS23250	BWI76_RS23255	BWI76_RS23260	BWI76_RS23265
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.5	-0.5	-0.6	-0.3	-8.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	-0.6	-0.4	-0.6	-7.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.8	-0.1	-0.7	-7.4
r2a control	R2A control	-0.2	-0.4	-0.1	-0.0	-8.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	-1.1	-0.0	+0.1	-7.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.3	-0.7	-0.8	-7.4
r2a control	R2A control	-0.1	-0.1	+0.3	-0.2	-8.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.9	-0.2	-0.0	-0.5	-6.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.5	+0.3	+0.6	-0.3	-7.8
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.1	-0.0	+0.4	-0.2	-8.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-0.2	+0.5	+0.3	-7.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.2	+0.5	-0.1	-0.2	-7.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-0.5	-0.6	+0.1	+0.1	-6.4
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.0	-0.4	-0.1	-0.4	-6.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.3	-0.2	-1.0	-5.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.4	+0.4	-0.5	+0.5	-7.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.4	+0.2	-0.2	-0.2	-6.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.7	+0.2	+0.2	-7.9
r2a control	R2A control	-0.4	-0.0	+0.5	+0.1	-6.5
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.3	-0.2	+0.5	-0.1	-6.2
supernatant control	Vogels_fungal_media 0.1X	-0.5	+0.8	+0.2	-0.0	-6.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	+0.0	-0.3	+0.4	-0.2	-6.1
mixed community	RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	+0.2	-2.1	+0.2	+0.1	-4.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.0	+0.3	+0.3	+0.1	-6.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	+0.4	+0.3	+0.5	-0.1	-6.5
supernatant	Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	+0.5	+0.2	+0.3	-0.6	-5.5
rhizosphere	rhizosphere EcoFAB sample 3; outgrowth in LB	+0.2	+0.9	+0.7	-0.1	-6.5
mixed community	Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	-0.5	+1.7	+0.3	-0.3	-4.5
mixed community	LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL	+1.0	+0.8	+0.7	-0.9	-4.2
supernatant	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml	-0.5	+1.7	+0.5	+0.4	-4.2