Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS22660 and BWI76_RS22665 overlap by 20 nucleotidesBWI76_RS22665 and BWI76_RS22670 overlap by 4 nucleotidesBWI76_RS22670 and BWI76_RS22675 overlap by 1 nucleotidesBWI76_RS22675 and BWI76_RS22680 are separated by 19 nucleotides BWI76_RS22660: BWI76_RS22660 - 5'/3'-nucleotidase SurE, at 4,723,115 to 4,723,876 _RS22660 BWI76_RS22665: BWI76_RS22665 - tRNA pseudouridine(13) synthase TruD, at 4,723,857 to 4,724,906 _RS22665 BWI76_RS22670: BWI76_RS22670 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 4,724,903 to 4,725,382 _RS22670 BWI76_RS22675: BWI76_RS22675 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 4,725,382 to 4,726,092 _RS22675 BWI76_RS22680: BWI76_RS22680 - cell division protein FtsB, at 4,726,112 to 4,726,429 _RS22680
Group Condition BWI76_RS22660 BWI76_RS22665 BWI76_RS22670 BWI76_RS22675 BWI76_RS22680
nitrogen source L-tyrosine (N) -1.2 -0.2 N.D. N.D. N.D.
stress Cobalt chloride 0.5 mM -0.0 -1.0 N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.5 -0.5 N.D. N.D. N.D.
phage K. M5a1 KLEB10 MOI 10 -0.2 -0.8 N.D. N.D. N.D.
carbon source Cytidine (C) -0.5 -0.3 N.D. N.D. N.D.
carbon source succinate (C) -0.2 -0.7 N.D. N.D. N.D.
supernatant control Vogels_fungal_media; pH 5.5 -0.7 -0.2 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -0.3 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -0.4 N.D. N.D. N.D.
stress perchlorate 100 mM -0.5 -0.3 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 -0.4 N.D. N.D. N.D.
carbon source D-Maltose (C) -0.5 -0.3 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -0.2 N.D. N.D. N.D.
carbon source L-Lactate (C) -0.3 -0.4 N.D. N.D. N.D.
mixed community RCH2_defined_noCarbon with Mixed culture; Escherichia coli BW25113 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x -0.8 +0.2 N.D. N.D. N.D.
mixed community RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x -0.5 +0.2 N.D. N.D. N.D.
nitrogen source L-Phenylalanine (N) +0.4 -0.6 N.D. N.D. N.D.
carbon source L-Glutamine (C) -0.6 +0.4 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 +0.5 N.D. N.D. N.D.
mixed community RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x -0.4 +0.4 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.5 N.D. N.D. N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x -0.2 +0.5 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 +0.7 N.D. N.D. N.D.
stress Chloramphenicol 0.001 mg/ml +0.9 -0.2 N.D. N.D. N.D.
phage KLEB17 MOI 1 +0.7 +0.2 N.D. N.D. N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x +0.3 +0.6 N.D. N.D. N.D.
phage KLEB16 MOI 0.1 +0.5 +0.3 N.D. N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x +0.5 +0.5 N.D. N.D. N.D.
phage KLEB16 MOI 1 +0.4 +0.7 N.D. N.D. N.D.
phage K. M5a1 KLEB26 MOI 0.1 +0.9 +0.6 N.D. N.D. N.D.
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