Fitness for 5 genes in Klebsiella michiganensis M5al

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BWI76_RS22375	BWI76_RS22380	BWI76_RS22385	BWI76_RS22390	BWI76_RS22395
nitrogen source	L-Cysteine (N)	-0.5	-0.5	-0.3	-0.4	-0.0
carbon source	D-Alanine (C)	-0.7	-0.0	-0.3	-0.5	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1	-0.1	+0.3	-0.0	-0.6
phage	KLEB16 MOI 10	+0.2	-0.9	+0.1	-0.1	-0.3
mixed community	LB 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	-0.9	+0.1	+0.1	-0.6	+0.5
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM	-0.2	-0.6	+0.4	-0.2	-0.2
supernatant control	Vogels_fungal_media; pH 5.5	+0.5	-0.5	-0.2	-0.5	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	-0.3	-0.2	+0.5	-0.1
mixed community	LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL	-0.7	+0.4	-0.2	-0.2	+0.3
nitrogen fixation	L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days	-0.5	-0.4	+0.4	-0.0	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	+0.5	+0.2	+0.5	-0.5
mixed community	RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	-0.3	+0.6	+0.1	-0.7	+0.1
nitrogen source	Thymine (N)	+0.2	-0.2	+0.6	-0.3	-0.3
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x	-0.3	+0.4	+0.1	-0.5	+0.4
mixed community	Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL	-0.5	+0.5	+0.1	+0.2	+0.3
mixed community	RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.2	+0.6	+0.4	-0.3	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.1	-0.3	-0.3	+0.0	+0.2
stress	Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL	+0.5	-0.5	+0.2	+0.2	+0.3
ecofab	RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL	+0.3	-0.3	+0.4	+0.1	+0.6
rhizosphere	rhizosphere EcoFAB sample 3; outgrowth in LB	+1.0	-0.1	+0.1	+0.3	-0.4
phage	KLEB31 MOI 1	+0.6	+0.5	+0.2	-0.3	+0.3
micoeukaryotes	Tetrahymena sp., Mixed culture-1	+0.4	+0.4	+0.2	-0.3	+0.6
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.6	-0.2	+0.4	-0.0	+0.6
mixed community	LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL	+0.2	+0.8	+0.1	-0.1	+0.5
carbon source	Gly-Glu (C)	-0.1	+1.5	+0.3	-0.0	-0.1
phage	KLEB17 MOI 1	+1.0	+0.3	+0.2	+0.3	-0.2
stress	Cobalt chloride 0.5 mM	+0.4	+0.5	+0.2	+0.4	+0.1
nitrogen source	L-Serine (N)	+0.4	+0.4	+0.2	+0.3	+0.4
mixed community	RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.1	+0.6	+0.6	-0.1	+0.7
phage	B3 MOi 1	+0.4	+0.4	+0.3	+0.2	+0.5