Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS21545 and BWI76_RS21550 overlap by 36 nucleotidesBWI76_RS21550 and BWI76_RS21555 are separated by 13 nucleotidesBWI76_RS21555 and BWI76_RS21560 are separated by 86 nucleotidesBWI76_RS21560 and BWI76_RS21565 are separated by 147 nucleotides BWI76_RS21545: BWI76_RS21545 - nucleotide exchange factor GrpE, at 4,511,372 to 4,511,962 _RS21545 BWI76_RS21550: BWI76_RS21550 - inorganic polyphosphate kinase, at 4,511,927 to 4,512,073 _RS21550 BWI76_RS21555: BWI76_RS21555 - NAD(+) kinase, at 4,512,087 to 4,512,965 _RS21555 BWI76_RS21560: BWI76_RS21560 - DNA repair protein RecN, at 4,513,052 to 4,514,713 _RS21560 BWI76_RS21565: BWI76_RS21565 - outer membrane protein assembly factor BamE, at 4,514,861 to 4,515,202 _RS21565
Group Condition BWI76_RS21545 BWI76_RS21550 BWI76_RS21555 BWI76_RS21560 BWI76_RS21565
nitrogen source Glucuronamide (N) N.D. N.D. N.D. -0.0 -5.1
stress Cobalt chloride 0.5 mM N.D. N.D. N.D. +0.1 -4.7
nitrogen source nitrate (N) N.D. N.D. N.D. +0.6 -5.1
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x N.D. N.D. N.D. -0.9 -3.6
mixed community RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x N.D. N.D. N.D. -0.8 -3.6
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x N.D. N.D. N.D. -0.9 -3.5
stress RCH2_defined_1percent_glucose with Chloride 600 mM N.D. N.D. N.D. -0.3 -4.1
mixed community RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x N.D. N.D. N.D. -0.9 -3.5
mixed community RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x N.D. N.D. N.D. -0.7 -3.6
mixed community Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL N.D. N.D. N.D. -0.4 -3.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.4 -3.7
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml N.D. N.D. N.D. -0.5 -3.5
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x N.D. N.D. N.D. -0.3 -3.6
nitrogen source Casamino Acids (N) N.D. N.D. N.D. -0.4 -3.3
stress Paraquat dichloride 0.1 mg/ml N.D. N.D. N.D. -0.3 -3.3
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x N.D. N.D. N.D. -0.3 -3.3
phage KLEB20 MOI 0.1 N.D. N.D. N.D. -0.2 -3.2
stress Fungal_growth_media_mCAFEs_v1 with Vancomycin 0.01 mg/mL N.D. N.D. N.D. -0.8 -2.4
stress Fungal_growth_media_mCAFEs_v1 with Phosphomycin 0.01 mg/mL N.D. N.D. N.D. -0.6 -2.5
phage KLEB1 MOI 0.1 N.D. N.D. N.D. -0.8 -2.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.3 -2.7
stress Chlorite 2.5 mM N.D. N.D. N.D. -0.8 -1.9
phage KLEB16 MOI 0.1 N.D. N.D. N.D. -0.5 -2.3
mixed community RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x N.D. N.D. N.D. -1.1 -1.6
nitrogen source Uridine (N) N.D. N.D. N.D. +0.4 -2.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. +0.9 -2.3
nitrogen source D-Alanine (N) N.D. N.D. N.D. -1.3 +1.6
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM N.D. N.D. N.D. -0.6 +2.3
phage K. M5a1 KLEB22 MOI 10 N.D. N.D. N.D. +1.2 +2.0
phage K. M5a1 KLEB23 MOI 1 N.D. N.D. N.D. +1.4 +2.4
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