Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS21490 and BWI76_RS21495 are separated by 11 nucleotidesBWI76_RS21495 and BWI76_RS21500 are separated by 5 nucleotidesBWI76_RS21500 and BWI76_RS21505 are separated by 54 nucleotidesBWI76_RS21505 and BWI76_RS21510 are separated by 120 nucleotides BWI76_RS21490: BWI76_RS21490 - GGDEF domain-containing protein, at 4,501,737 to 4,502,960 _RS21490 BWI76_RS21495: BWI76_RS21495 - outer membrane lipoprotein, at 4,502,972 to 4,503,454 _RS21495 BWI76_RS21500: BWI76_RS21500 - membrane protein, at 4,503,460 to 4,504,830 _RS21500 BWI76_RS21505: BWI76_RS21505 - hypothetical protein, at 4,504,885 to 4,505,322 _RS21505 BWI76_RS21510: BWI76_RS21510 - 50S ribosomal protein L19, at 4,505,443 to 4,505,790 _RS21510
Group Condition BWI76_RS21490 BWI76_RS21495 BWI76_RS21500 BWI76_RS21505 BWI76_RS21510
nitrogen source Gly-DL-Asp (N) +0.1 +0.2 -0.4 -4.5 N.D.
stress nitrite 20 mM -0.5 -0.3 +0.0 -3.3 N.D.
phage K. M5a1 KLEB23 MOI 10 -0.5 -0.7 -0.4 -2.2 N.D.
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB -0.2 -1.1 -0.1 -2.4 N.D.
nitrogen source Thymine (N) +0.3 -0.3 -2.8 -0.6 N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.7 -0.3 +0.4 -2.6 N.D.
phage KLEB1 MOI 10 -0.5 -1.4 -0.3 -1.0 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.1 -0.2 -0.2 -2.8 N.D.
ecofab LB in EcoFAB_3.5mL -1.4 -0.4 -0.4 -0.8 N.D.
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x +0.1 +0.7 +0.0 -3.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 +0.6 -0.1 -2.2 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.2 +0.4 +0.3 -2.6 N.D.
nitrogen source L-Cysteine (N) +0.3 +0.3 +0.0 -2.4 N.D.
carbon source D-Glucose 2 mM (C) +0.3 +0.1 +0.5 -2.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 +0.9 -0.9 -0.5 N.D.
carbon source D-Alanine (C) +0.3 +0.5 +0.6 -1.8 N.D.
mixed community Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL +1.4 +0.2 -0.1 -1.8 N.D.
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml +1.1 +0.8 -0.2 -1.7 N.D.
nitrogen source L-Phenylalanine (N) +0.9 +0.6 -0.9 -0.6 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +1.1 +0.8 -0.3 -1.3 N.D.
phage KLEB30 MOI 1 +0.6 -0.3 -0.9 +1.1 N.D.
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x +1.2 +0.8 -0.4 -0.6 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB +1.0 +0.8 -0.6 +0.7 N.D.
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL +0.5 +0.1 -0.3 +2.3 N.D.
stress Sisomicin 0.008 mg/ml +0.4 -1.2 +2.0 +1.7 N.D.
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL +0.4 +0.8 +0.0 +1.6 N.D.
phage KLEB16 MOI 0.1 +0.4 +0.7 +0.8 +1.3 N.D.
phage KLEB29 MOI 1 +1.1 +0.3 -0.1 +1.9 N.D.
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 3 days +0.3 +0.1 +1.7 +1.8 N.D.
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days +0.3 +0.1 +1.7 +1.9 N.D.
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