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Fitness for 5 genes in
Klebsiella michiganensis M5al
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500 nt
BWI76_RS21460 and BWI76_RS21465 are separated by 261 nucleotides
BWI76_RS21465 and BWI76_RS21470 overlap by 4 nucleotides
BWI76_RS21470 and BWI76_RS21475 are separated by 68 nucleotides
BWI76_RS21475 and BWI76_RS21480 are separated by 9 nucleotides
BWI76_RS21460: BWI76_RS21460 - translation inhibitor protein RaiA, at 4,495,994 to 4,496,329
_RS21460
BWI76_RS21465: BWI76_RS21465 - bifunctional chorismate mutase/prephenate dehydratase, at 4,496,591 to 4,497,751
_RS21465
BWI76_RS21470: BWI76_RS21470 - gluconolaconase, at 4,497,748 to 4,498,620
_RS21470
BWI76_RS21475: BWI76_RS21475 - bifunctional chorismate mutase/prephenate dehydrogenase, at 4,498,689 to 4,499,810
_RS21475
BWI76_RS21480: BWI76_RS21480 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 4,499,820 to 4,500,890
_RS21480
Group
Condition
BWI76
_RS21460
BWI76
_RS21465
BWI76
_RS21470
BWI76
_RS21475
BWI76
_RS21480
nitrogen source
Uridine (N)
-1.7
-5.8
-0.4
-7.1
-2.8
nitrogen source
Cytosine (N)
+1.1
-7.6
+0.1
-7.8
-2.0
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
-0.6
-5.3
-0.2
-9.4
-0.8
nitrogen source
Glycine (N)
-1.4
-8.0
+0.1
-6.0
-0.6
nitrogen source
L-Histidine (N)
+0.3
-8.3
-0.2
-5.7
-2.1
carbon source
D-Cellobiose (C)
-0.1
-7.7
+0.0
-7.1
-1.1
nitrogen source
L-Arginine (N)
-0.9
-6.6
-0.9
-5.8
-1.5
exudates
RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x
-0.2
-2.7
-0.6
-9.4
-2.3
carbon source
Mix of RCH2_defined_noCarbon and Fungal_growth_media_mCAFEs_v1_noCarbon; D-Glucose at 55.5 mM
+0.1
-5.2
-0.3
-7.7
-1.9
nitrogen source
Cytidine (N)
-0.0
-5.3
-0.0
-7.2
-2.2
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM
-1.2
-4.5
-0.1
-8.0
-1.0
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
-0.2
-3.9
-0.3
-9.5
-0.8
carbon source
RCH2_defined_glucose with MS_media 0.5x
+0.3
-4.3
+0.3
-9.6
-1.5
carbon source
L-Malic (C)
+0.1
-6.4
-0.1
-6.7
-1.4
nitrogen source
L-Proline (N)
+0.0
-5.8
-0.1
-6.6
-2.0
carbon source
2-Deoxy-D-ribonic lithium salt 10 mM (C)
-2.0
-4.3
-0.3
-7.0
-0.8
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM
-0.0
-5.7
-0.5
-7.0
-1.1
nitrogen source
Adenosine (N)
+0.5
-5.3
-0.0
-8.3
-1.3
carbon source
D-Serine (C)
+0.1
-6.2
-0.5
-6.4
-1.3
nitrogen source
Ammonium chloride (N)
+0.2
-6.0
-0.2
-6.5
-1.7
carbon source
D-Gluconic Acid (C)
+0.8
-6.4
-0.4
-6.7
-1.1
carbon source
L-Glutamine (C)
-1.0
-7.5
+0.1
-5.9
+0.7
carbon source
2'-Deoxycytidine 10 mM (C)
+0.9
-5.7
-0.7
-7.1
-0.9
nitrogen source
N-Acetyl-D-glucosamine (N)
+0.9
-6.8
-0.4
-5.4
-1.8
nitrogen source
D-Alanine (N)
-0.7
-7.7
+0.6
-4.2
-1.4
nitrogen source
Cytosine (N)
+0.3
-4.8
+0.2
-6.8
-2.3
nitrogen source
Inosine (N)
+0.7
-4.8
+0.1
-6.5
-2.7
carbon source
D-Glucose-6-Phosphate (C)
+0.6
-7.7
+0.4
-5.8
-0.8
nitrogen source
Uridine (N)
+0.8
-8.0
+0.7
-3.7
-2.5
nitrogen source
L-Proline (N)
+0.7
-5.6
+0.4
-5.9
-1.9
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