Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS21150 and BWI76_RS21155 are separated by 19 nucleotidesBWI76_RS21155 and BWI76_RS21160 are separated by 26 nucleotidesBWI76_RS21160 and BWI76_RS21165 are separated by 177 nucleotidesBWI76_RS21165 and BWI76_RS21170 are separated by 233 nucleotides BWI76_RS21150: BWI76_RS21150 - iron-sulfur cluster assembly accessory protein, at 4,429,300 to 4,429,623 _RS21150 BWI76_RS21155: BWI76_RS21155 - iron-sulfur cluster scaffold-like protein, at 4,429,643 to 4,430,029 _RS21155 BWI76_RS21160: BWI76_RS21160 - IscS subfamily cysteine desulfurase, at 4,430,056 to 4,431,270 _RS21160 BWI76_RS21165: BWI76_RS21165 - Fe-S cluster assembly transcriptional regulator IscR, at 4,431,448 to 4,431,939 _RS21165 BWI76_RS21170: BWI76_RS21170 - tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ, at 4,432,173 to 4,432,904 _RS21170
Group Condition BWI76_RS21150 BWI76_RS21155 BWI76_RS21160 BWI76_RS21165 BWI76_RS21170
mixed community Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL N.D. N.D. N.D. -4.9 -0.0
stress Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM N.D. N.D. N.D. -4.7 -0.2
stress Nickel (II) chloride 1.5 mM N.D. N.D. N.D. -3.9 -0.8
mixed community RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x N.D. N.D. N.D. -4.9 +0.3
stress Sisomicin 0.008 mg/ml N.D. N.D. N.D. -5.7 +1.5
stress Fungal_growth_media_mCAFEs_v1 with nitrate 20 mM N.D. N.D. N.D. -3.7 +0.0
stress Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL N.D. N.D. N.D. -3.1 -0.4
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. N.D. N.D. -3.0 -0.4
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL N.D. N.D. N.D. -3.6 +0.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x N.D. N.D. N.D. -2.1 -1.3
mixed community Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL N.D. N.D. N.D. -3.2 -0.1
stress Nickel (II) chloride 1.5 mM N.D. N.D. N.D. -2.5 -0.7
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM N.D. N.D. N.D. -2.5 -0.7
stress Paraquat dichloride 0.1 mg/ml N.D. N.D. N.D. -1.9 -1.2
stress Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM N.D. N.D. N.D. -2.7 -0.3
nitrogen source D-Alanine (N) N.D. N.D. N.D. -2.8 -0.2
mixed community Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL N.D. N.D. N.D. -2.7 -0.2
stress Fungal_growth_media_mCAFEs_v1 with Zinc 2 mM N.D. N.D. N.D. -2.6 +0.3
carbon source RCH2_defined_noCarbon with Glu_DLac_Acetate_mix 1 x N.D. N.D. N.D. -2.5 +0.8
stress Sisomicin 0.008 mg/ml N.D. N.D. N.D. -2.1 +0.8
stress RCH2_defined_1percent_glucose with Chloride 600 mM N.D. N.D. N.D. -2.3 +1.2
stress RCH2_defined_1percent_glucose with Chloride 600 mM N.D. N.D. N.D. -2.0 +1.2
ecofab RCH2_defined_Glucose_noNitrogen in EcoFAB_3.5mL N.D. N.D. N.D. +2.3 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. +2.6 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. +2.8 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. +2.7 +0.3
rhizosphere rhizosphere EcoFAB sample 3; outgrowth in LB N.D. N.D. N.D. +2.9 +1.4
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. +4.7 +0.1
carbon source succinate (C) N.D. N.D. N.D. +5.5 +0.3
carbon source succinate (C) N.D. N.D. N.D. +7.7 +0.4
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