Fitness for 5 genes in Klebsiella michiganensis M5al

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500 ntBWI76_RS20935 and BWI76_RS20940 are separated by 71 nucleotidesBWI76_RS20940 and BWI76_RS20945 are separated by 95 nucleotidesBWI76_RS20945 and BWI76_RS20950 overlap by 63 nucleotidesBWI76_RS20950 and BWI76_RS20955 are separated by 54 nucleotides BWI76_RS20935: BWI76_RS20935 - DnaA regulatory inactivator Hda, at 4,376,780 to 4,377,505 _RS20935 BWI76_RS20940: BWI76_RS20940 - uracil/xanthine transporter, at 4,377,577 to 4,378,866 _RS20940 BWI76_RS20945: BWI76_RS20945 - uracil phosphoribosyltransferase, at 4,378,962 to 4,379,588 _RS20945 BWI76_RS20950: BWI76_RS20950 - hypothetical protein, at 4,379,526 to 4,379,716 _RS20950 BWI76_RS20955: BWI76_RS20955 - 6-phospho-beta-glucosidase, at 4,379,771 to 4,381,201 _RS20955
Group Condition BWI76_RS20935 BWI76_RS20940 BWI76_RS20945 BWI76_RS20950 BWI76_RS20955
nitrogen source L-Arginine (N) N.D. -2.7 -0.7 N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -2.3 -0.4 N.D. -0.0
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. -1.6 -0.5 N.D. -0.3
stress copper (II) chloride 3 mM N.D. -1.5 -0.2 N.D. -0.1
phage KLEB1 MOI 0.1 N.D. -1.4 -0.2 N.D. -0.2
nitrogen source Cytosine (N) N.D. -1.4 -0.2 N.D. -0.2
stress Nickel (II) chloride 1 mM N.D. -1.4 -0.2 N.D. -0.1
stress nitrite 20 mM N.D. -1.0 -0.8 N.D. +0.1
phage K. M5a1 KLEB23 MOI 10 N.D. -0.9 -0.5 N.D. -0.3
nitrogen source L-Citrulline (N) N.D. -0.8 -0.7 N.D. +0.1
nitrogen source Glycine (N) N.D. -1.4 -0.3 N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -1.1 +0.4 N.D. -0.1
phage K. M5a1 KLEB22 MOI 1 N.D. +0.5 -0.9 N.D. -0.2
mixed community Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL N.D. +0.2 -1.5 N.D. +0.7
mixed community LB 0.5x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL N.D. +0.3 -1.2 N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.8 +0.8 N.D. -0.4
phage K. M5a1 KLEB23 MOI 10 N.D. +1.0 -0.6 N.D. -0.4
nitrogen source D-Alanine (N) N.D. +1.1 -0.8 N.D. -0.3
phage K. M5a1 KLEB22 MOI 10 N.D. +1.2 -0.5 N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +1.2 -0.0 N.D. -0.4
phage KLEB30 MOI 1 N.D. +0.7 +0.5 N.D. -0.4
mixed community Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL N.D. +0.8 -0.3 N.D. +0.5
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x and biotin 0.32 ug/ml N.D. +1.4 -0.4 N.D. +0.0
mixed community RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x N.D. +0.6 +0.7 N.D. +0.3
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x N.D. +1.2 +0.2 N.D. +0.3
stress Fungal_growth_media_mCAFEs_v1 with Thallium(I) acetate 0.05 mg/mL N.D. +1.2 +0.3 N.D. +0.3
supernatant Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x N.D. +1.2 +0.2 N.D. +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +1.7 +0.3 N.D. -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +2.1 +0.2 N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.0 +2.9 N.D. +0.0
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