Fitness for 5 genes in Klebsiella michiganensis M5al

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BWI76_RS20260	BWI76_RS20265	BWI76_RS20270	BWI76_RS20275	BWI76_RS20280
rhizosphere	rhizosphere EcoFAB sample 3; outgrowth in LB	-0.8	-0.8	-8.2	N.D.	+0.0
carbon source	D-Alanine (C)	-0.0	+0.0	-6.5	N.D.	-0.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.7	-1.1	-4.5	N.D.	+0.1
carbon source	D-Lactate (C)	-0.1	+0.2	-5.2	N.D.	-0.1
carbon source	succinate (C)	+0.1	+0.1	-4.8	N.D.	-0.3
carbon source	L-Glutamine (C)	+0.1	+0.1	-4.2	N.D.	+0.0
carbon source	D-Alanine (C)	+0.1	+0.3	-3.8	N.D.	-0.2
mixed community	LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL	-0.1	-0.2	-1.5	N.D.	-1.8
mixed community	RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.3	-0.6	-0.4	N.D.	-2.1
mixed community	RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	-0.3	-0.3	-0.8	N.D.	-1.9
carbon source	succinate (C)	+0.1	+0.1	-3.4	N.D.	+0.1
mixed community	RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	+0.0	-0.2	-0.8	N.D.	-2.1
supernatant	Fungal_growth_media_mCAFEs_v1 with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v2, filtered and pH-adjusted 0.8 x	-0.1	-0.3	-0.8	N.D.	-2.0
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 6 x	-0.3	-0.3	-1.3	N.D.	-1.2
carbon source	L-Alanine (C)	+0.1	+0.1	-2.9	N.D.	-0.4
mixed community	RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.1	-0.5	-0.7	N.D.	-1.6
carbon source	Inosine (C)	-0.0	-0.1	-2.6	N.D.	-0.2
mixed community	RCH2_defined_noCarbon with Mixed culture; Arthrobacter sp. AnTP99 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	-0.3	-0.3	-0.8	N.D.	-1.4
carbon source	L-Alanine (C)	-0.1	+0.2	-2.6	N.D.	-0.2
mixed community	LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL	-0.1	-0.1	-1.0	N.D.	-1.4
carbon source	D-Lactate (C)	-0.1	+0.0	-2.4	N.D.	-0.1
mixed community	RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x	-0.0	-0.4	-1.0	N.D.	-1.2
carbon source	Gly-Glu (C)	+0.1	+0.2	-2.2	N.D.	-0.7
mixed community	RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x	-0.3	-0.4	-0.8	N.D.	-1.2
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.3	-1.0	N.D.	-1.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.3	-2.1	N.D.	+0.3
carbon source	Inosine (C)	+0.2	+0.2	-2.7	N.D.	+0.1
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	-0.1	-0.1	-2.0	N.D.	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.5	-1.4	N.D.	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	+0.2	-1.2	N.D.	+0.6